Transcript 295168

Transcript

ID CARD

MetamORF ID

295168

ENST00000358239

Name

PPP1CA-202

Strand

Biotype

protein_coding

Start-end positions

67398431-67401871

CDS Start-stop positions

67398535-67401782

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

HGNC:9281

Aliases

ENSG00000172531,
HGNC:9281, NCBI:5499, OFF:PPP1CA,
PP-1A, PP1A, PP1alpha,
PPP1A, PPP1CA

Chr 11

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1732534	93	GTG ...	VAS ...	Ribo-seq	GTG		6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, hES, MDA-MB-231, Monocyte, RPE-1
295172	261	ATG ...	MAV ...	Ribo-seq	ATG		21	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	BJ, Blood, Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
1732536	129	CTG ...	LTR ...	Ribo-seq	CTG		7	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, Monocyte, RPE-1
3315781	1026	ATG ...	MSD ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
2616937	171	TGG ...	WPI ...	Ribo-seq	TGG		2	sORFs_org_Human	InCDS Overlapping sORF	HeLa, THP-1
3201264	141	TGT ...	CGL ...	Ribo-seq	TGT		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
3201266	165	ATA ...	IRS ...	Ribo-seq	ATA		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
1732538	135	CTG ...	LTL ...	Ribo-seq	CTG		8	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, Monocyte, RPE-1
295167	216	ATG ...	MWT ...	Ribo-seq	ATG		17	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
295174	267	TTG ...	LSM ...	Ribo-seq	TTG		19	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
1208836	75	TTG ...	LEP ...	Ribo-seq	TTG		9	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, Monocyte, RPE-1

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