Metam
ORF

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Transcript

ID CARD

MetamORF ID

4109673

ID

ENST00000355260

Name

NUP98-202

Strand

-

Biotype

protein_coding

Start-end positions

3675799-3797458

CDS Start-stop positions

3676159-3782117

CDS Relative positions

-

Sequences

Transcript sequence

TGT ...

Gene

ID

HGNC:8068

Aliases

ENSG00000110713,
HGNC:8068, NCBI:4928, NUP96,
NUP98, OFF:NUP98


Chr 11

ORFs

20 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1204521 39

ATG ...

MEF ...

Ribo-seq
ATG moderate 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
293329 87

ATG ...

MKK ...

Ribo-seq
ATG 1 Johnstone2016
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
2301 36

ATG ...

MIT ...

Ribo-seq
ATG weak 1 Johnstone2016
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
1208215 171

ATG ...

MKE ...

Ribo-seq
ATG 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
2326685 102

ATG ...

MTL ...

Ribo-seq
ATG 1 Johnstone2016
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
2305 30

ATG ...

MGW ...

Ribo-seq
ATG moderate 1 Johnstone2016
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
282382 45

ATG ...

MDP ...

Ribo-seq
ATG moderate 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
1204537 150

ATG ...

MRI ...

Ribo-seq
ATG weak 1 Johnstone2016
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
1208217 45

ATG ...

MEH ...

Ribo-seq
ATG 1 Johnstone2016
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
1731173 114

ATG ...

MWM ...

Ribo-seq
ATG 1 Johnstone2016
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
3312178 5403

ATG ...

MFN ...

Ribo-seq
ATG 1 Johnstone2016
    CDS
Brain_tumor, HEK293, HeLa,
HFF
1208220 171

ATG ...

MVR ...

Ribo-seq
ATG 1 Johnstone2016
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
293394 228

ATG ...

MPL ...

Ribo-seq
ATG 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
2299 108

ATG ...

MSY ...

Ribo-seq
ATG moderate 1 Johnstone2016
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
2310386 51

ATG ...

MLL ...

Ribo-seq
ATG weak 1 Johnstone2016
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
1511746 54

ATG ...

MAN ...

Ribo-seq
ATG 1 Johnstone2016
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
1818940 33

ATG ...

MPS ...

Ribo-seq
ATG weak 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
293335 72

ATG ...

MRD ...

Ribo-seq
ATG 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
282418 72

ATG ...

MGW ...

Ribo-seq
ATG strong 1 Johnstone2016
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
1204523 33

ATG ...

MIL ...

Ribo-seq
ATG weak 1 Johnstone2016
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS