Transcript 13621 | MetamORF

Transcript

ID CARD

MetamORF ID

13621

ENST00000337815

Name

ZNF664-201

Strand

Biotype

protein_coding

Start-end positions

123973295-124015422

CDS Start-stop positions

124012145-124012930

CDS Relative positions

950-1735

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

HGNC:25406

Aliases

DKFZp761B128,
ENSG00000179195, HGNC:25406, NCBI:144348,
OFF:ZNF664, ZFOC1, ZNF176,
ZNF664

Chr 12

ORFs

81 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1832798	45	ATG ...	MPS ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
1832810	90	TTG ...	LIL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1832790	42	CTG ...	LHP ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa
1832792	39	GTG ...	VPL ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
412857	132	TGG ...	WKI ...	Ribo-seq	TGG		2	sORFs_org_Human	sORF Upstream	HCT116, Jurkat
706890	33	AAT ...	NVL ...	Ribo-seq	AAT		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
3325270	786	ATG ...	MIY ...	Ribo-seq	ATG	moderate	1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
111055	234	TTG ...	LLE ...	Ribo-seq	TTG	weak	9	sORFs_org_Human	Alternative sORF Upstream	Blood, HAP1, HEK293, HeLa, hES, RPE-1
2341496	42	TTG ...	LHA ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2341478	213	GTG ...	VIR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2341486	129	GTG ...	VVR ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2341498	87	TTG ...	LWM ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, MDA-MB-231
1833376	168	TTG ...	LFD ...	Ribo-seq	TTG		2	sORFs_org_Human	sORF Upstream	HeLa, RPE-1
1832804	81	TTG ...	LAD ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
111071	48	GTG ...	VLM ...	Ribo-seq	GTG	weak	11	sORFs_org_Human	sORF Upstream	HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1
705873	60	GAG ...	ELQ ...	Ribo-seq	GAG	moderate	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
1143723	30	TTG ...	LHF ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	Alternative sORF Upstream	HEK293, HeLa, hES, RPE-1
2341482	138	GTG ...	VMI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2341488	72	ATG ...	MLR ...	Ribo-seq	ATG	weak	5	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1832794	66	GTG ...	VRL ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
706888	63	TGT ...	CGP ...	Ribo-seq	TGT		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
2341480	33	TTG ...	LER ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231, RPE-1
111061	210	ATG ...	MCR ...	Ribo-seq	ATG	weak	11	sORFs_org_Human Johnstone2016	Alternative sORF Upstream	Blood, Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, RPE-1
2341472	282	CTG ...	LRE ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2001716	117	TTG ...	LRA ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	Alternative sORF Upstream	HEK293, HeLa, RPE-1
2341474	240	CTG ...	LRS ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1741186	72	CTG ...	LEC ...	Ribo-seq	CTG		5	sORFs_org_Human	sORF Upstream	Blood, HEK293, MDA-MB-231, RPE-1
1832816	63	GTG ...	VIR ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
111069	78	TTG ...	LTT ...	Ribo-seq	TTG	moderate	10	sORFs_org_Human	sORF Upstream	HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1
111672	126	CTG ...	LTP ...	Ribo-seq	CTG		19	sORFs_org_Human	sORF Upstream	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
111077	87	ATG ...	MQE ...	Ribo-seq	ATG	moderate	15	sORFs_org_Human Johnstone2016	Alternative sORF Upstream	Blood, Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, Jurkat, MDA-MB-231, RPE-1
2966585	90	ATG ...	MLW ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, hES, HFF
2341492	45	GTG ...	VAK ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2555767	42	CTG ...	LHA ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
412855	69	GGA ...	GRL ...	Ribo-seq	GGA		1	sORFs_org_Human	Alternative sORF Upstream	HCT116
111057	231	CTG ...	LER ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	Alternative sORF Upstream	Blood, HAP1, HEK293, HeLa, hES, RPE-1
111075	99	GTG ...	VRN ...	Ribo-seq	GTG	weak	12	sORFs_org_Human	Alternative sORF Upstream	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1
1832802	30	ATG ...	MHW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
706886	111	GAG ...	EEP ...	Ribo-seq	GAG		6	sORFs_org_Human	Alternative sORF Upstream	BJ, HEK293, HeLa, Jurkat, THP-1
1833378	54	TTG ...	LTT ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative sORF Upstream	HeLa
2341494	45	TTG ...	LEL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231, RPE-1
1832786	48	CTG ...	LPK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative sORF Upstream	HeLa
2341476	222	GTG ...	VTS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1832788	75	GTG ...	VWE ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa
1832796	60	TTG ...	LIC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
111676	48	TTG ...	LED ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative sORF Upstream	Blood, HEK293, HeLa, hES, U2OS
1832822	60	CTG ...	LSK ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
2341484	135	ATG ...	MIV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1741184	90	CTG ...	LPL ...	Ribo-seq	CTG		4	sORFs_org_Human	sORF Upstream	Blood, HEK293, RPE-1
1832818	51	GTG ...	VVS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1832820	48	GTG ...	VSV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
2341490	63	GTG ...	VWQ ...	Ribo-seq	GTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, MDA-MB-231, RPE-1
706884	135	AGG ...	RRA ...	Ribo-seq	AGG		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
3325264	15	ATG ...	MIP ...	Ribo-seq	ATG	moderate	1	Johnstone2016	sORF Upstream	Brain_tumor, HEK293, HeLa, HFF
111067	81	ATG ...	MLT ...	Ribo-seq	ATG	moderate	11	sORFs_org_Human Johnstone2016	sORF Upstream	Brain_tumor, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1832808	36	CTG ...	LLI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
2556605	99	CTG ...	LWA ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF Upstream	HEK293, RPE-1
1832824	48	TTG ...	LEN ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
13620	39	CTG ...	LTL ...	Ribo-seq	CTG	moderate	15	sORFs_org_Human	Alternative sORF Upstream	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1
706892	39	GTG ...	VTC ...	Ribo-seq	GTG		8	sORFs_org_Human	sORF Upstream	Blood, HEK293, hES, Jurkat, MDA-MB-231, RPE-1
2341459	219	CTG ...	LLA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	sORF Upstream	HEK293, MDA-MB-231
451633	156	GTG ...	VGA ...	Ribo-seq	GTG		12	sORFs_org_Human	sORF Upstream	BJ, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, RPE-1, U2OS
2556608	84	CTG ...	LPV ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF Upstream	HEK293, RPE-1
1740126	93	CTG ...	LYS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	sORF Upstream	Blood, HEK293, HeLa, MDA-MB-231
111063	186	CTG ...	LTL ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	Alternative sORF Upstream	Blood, HAP1, HEK293, HeLa, hES
111059	213	CTG ...	LMC ...	Ribo-seq	CTG	weak	10	sORFs_org_Human	Alternative sORF Upstream	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, RPE-1
706894	60	AGA ...	RDT ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
1740119	198	CTG ...	LSD ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	sORF Upstream	Blood, HEK293, HeLa, MDA-MB-231
1832800	36	GTG ...	VFH ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
2555765	75	GTG ...	VWE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
111065	90	GTG ...	VRH ...	Ribo-seq	GTG	moderate	12	sORFs_org_Human	Alternative sORF Upstream	Blood, HAP1, HEK293, HeLa, hES
1144134	156	CTG ...	LQI ...	Ribo-seq	CTG		7	sORFs_org_Human	sORF Upstream	HEK293, HeLa, hES, MDA-MB-231, RPE-1
1740123	189	GTG ...	VQE ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	sORF Upstream	Blood, HEK293, HeLa, MDA-MB-231
1832806	45	GTG ...	VWI ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1832814	36	TTG ...	LGK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
2341500	81	ATG ...	MWE ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, MDA-MB-231
111073	42	ATG ...	MSY ...	Ribo-seq	ATG	weak	10	sORFs_org_Human	sORF Upstream	HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1
1832812	51	TTG ...	LLR ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
111052	63	ATG ...	MRN ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative sORF Upstream	Brain_tumor, HEK293, HeLa, HFF
705878	81	GAA ...	EET ...	Ribo-seq	GAA	moderate	1	sORFs_org_Human	Alternative sORF Upstream	Jurkat
2341502	48	GTG ...	VHP ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, MDA-MB-231

Export data