Transcript 4860 | MetamORF

Transcript

ID CARD

MetamORF ID

4860

ENST00000337652

Name

MEN1-203

Strand

Biotype

protein_coding

Start-end positions

64803524-64811294

CDS Start-stop positions

64804334-64810109

CDS Relative positions

Sequences

Transcript sequence

TAT ...

Genome browsers

UCSC

Gene

HGNC:7010

Aliases

ENSG00000133895,
HGNC:7010, MEN1, NCBI:4221,
OFF:MEN1

Chr 11

ORFs

64 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1726353	36	ATG ...	MWA ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, hES, MDA-MB-231
287163	39	CTG ...	LPG ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231, U2OS
2316724	90	CTG ...	LKV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
408031	270	GCT ...	AGP ...	Ribo-seq	GCT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
1732253	102	TTG ...	LTC ...	Ribo-seq	TTG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HeLa, hES, MDA-MB-231
4886	285	CTG ...	LPS ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
534204	105	ATG ...	MCG ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, MDA-MB-231, U2OS
2328355	186	TTG ...	LPQ ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, MDA-MB-231
2316739	78	ATG ...	MGG ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2316741	84	CTG ...	LQM ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
294694	30	GTG ...	VWL ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
4880	78	TTG ...	LLW ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
8678	225	CTG ...	LAG ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, MDA-MB-231
4878	75	CTG ...	LWL ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2316726	108	CTG ...	LAQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
529547	180	GTG ...	VGR ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	U2OS
2316754	66	GTG ...	VPS ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
4859	114	CTG ...	LSA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
909172	57	ACC ...	TLP ...	Ribo-seq	ACC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
529555	87	ATG ...	MPA ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231, U2OS
1297623	93	ATG ...	MSY ...	Ribo-seq	ATG	weak	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293T, HeLa, MDA-MB-231
294699	105	ATG ...	MGS ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231, U2OS
4888	288	TTG ...	LLP ...	Ribo-seq	TTG	weak	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
2316730	120	CTG ...	LGL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
8676	66	CTG ...	LSS ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, U2OS
529549	120	GTG ...	VLR ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, U2OS
4871	39	CTG ...	LGS ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, U2OS
2316734	39	CTG ...	LGH ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, MDA-MB-231
909168	87	CAC ...	HQD ...	Ribo-seq	CAC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
909174	69	TGT ...	CVP ...	Ribo-seq	TGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2316732	150	GTG ...	VQC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
909166	60	GCT ...	AAT ...	Ribo-seq	GCT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
294701	114	TTG ...	LGP ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231, U2OS
8682	90	CTG ...	LRS ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231, U2OS
8680	39	ATG ...	MTW ...	Ribo-seq	ATG		6	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231
2054138	141	CTG ...	LAA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
909188	210	CTG ...	LST ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, Jurkat
909164	48	GGC ...	GTV ...	Ribo-seq	GGC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
4884	87	GTG ...	VWP ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
4874	39	ATG ...	MST ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
294696	36	ATG ...	MPV ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, hES, LCL, MDA-MB-231, U2OS
534206	129	CTG ...	LAT ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, MDA-MB-231, U2OS
909186	189	CAT ...	HPY ...	Ribo-seq	CAT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
909176	99	TCT ...	SPM ...	Ribo-seq	TCT	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
909182	36	CTC ...	LEK ...	Ribo-seq	CTC	strong	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2328353	159	ATG ...	MNT ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, MDA-MB-231
916546	111	ACC ...	TLP ...	Ribo-seq	ACC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
408035	294	CGT ...	RGA ...	Ribo-seq	CGT	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
2316722	84	GTG ...	VAA ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
916548	123	TGT ...	CVP ...	Ribo-seq	TGT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
408033	297	TGC ...	CAC ...	Ribo-seq	TGC	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HCT116, Jurkat
4867	60	CTG ...	LAR ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, U2OS
4865	36	CTG ...	LAV ...	Ribo-seq	CTG	strong	10	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, U2OS
2316752	48	TTG ...	LTC ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2684657	30	ATG ...	MTW ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, hES, RPE-1
909180	30	AAG ...	KGV ...	Ribo-seq	AAG	strong	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2316728	114	CTG ...	LSL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2316762	45	CTG ...	LPG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
909184	114	CCG ...	PTC ...	Ribo-seq	CCG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
4876	69	TTG ...	LGP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
1732257	153	GTG ...	VTA ...	Ribo-seq	GTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
2316737	45	CTG ...	LCC ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2316756	99	GTG ...	VTA ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1732255	120	GTG ...	VPS ...	Ribo-seq	GTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231

Export data