Transcript 2104 | MetamORF

Transcript

ID CARD

MetamORF ID

2104

ENST00000332231

Name

AP2A2-201

Strand

Biotype

protein_coding

Start-end positions

925809-1012245

CDS Start-stop positions

926022-1010625

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

HGNC:562

Aliases

ADTAB,
AP2A2, CLAPA2, DKFZP564D1864,
ENSG00000183020, HGNC:562, HIP9,
HYPJ, KIAA0899, NCBI:161,
OFF:AP2A2

Chr 11

ORFs

61 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
2110	63	GTG ...	VRP ...	Ribo-seq	GTG	weak	7	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, MDA-MB-231
282218	36	TTG ...	LSR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
936014	147	GTG ...	VPA ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	Brain, MDA-MB-231
936020	81	TTG ...	LFV ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, MDA-MB-231, RPE-1
940485	210	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, MDA-MB-231
903287	99	AGG ...	RLL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
282224	45	ATG ...	MRL ...	Ribo-seq	ATG	weak	10	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231
295908	33	CTG ...	LTT ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
100743	33	TTG ...	LDL ...	Ribo-seq	TTG	strong	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
2543046	30	ATG ...	MVI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
282231	111	ATG ...	MGA ...	Ribo-seq	ATG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, LCL, MDA-MB-231
295912	87	CTG ...	LCS ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL, MDA-MB-231
903305	69	ACA ...	TMV ...	Ribo-seq	ACA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
295910	159	GTG ...	VKR ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, LCL, MDA-MB-231
903291	33	TTT ...	FHL ...	Ribo-seq	TTT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
903301	42	ATC ...	IWR ...	Ribo-seq	ATC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
282206	90	ATG ...	MAI ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, hES, LCL, MDA-MB-231
282204	93	TTG ...	LMA ...	Ribo-seq	TTG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, hES, LCL, MDA-MB-231
936024	63	GTG ...	VCC ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, MDA-MB-231, RPE-1
936030	165	TTG ...	LDL ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain
940493	117	TTG ...	LEA ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, hES, MDA-MB-231, RPE-1
282216	72	CTG ...	LHP ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	hES, LCL, MDA-MB-231
903297	42	GCG ...	ATA ...	Ribo-seq	GCG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
940487	201	CTG ...	LPP ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, MDA-MB-231
940489	129	CTG ...	LWS ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, MDA-MB-231
2112	48	CTG ...	LRS ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HAP1, HEK293, MDA-MB-231, RPE-1
903299	30	CGA ...	RDA ...	Ribo-seq	CGA	strong	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2330153	69	TTG ...	LSP ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
633483	36	CTG ...	LQV ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	InCDS Overlapping sORF	HAP1, hES, MDA-MB-231, RPE-1, THP-1
2310094	51	CTG ...	LWS ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
282220	54	CTG ...	LAV ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, hES, LCL, MDA-MB-231, RPE-1
941736	282	CTG ...	LSL ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, MDA-MB-231
282226	39	CTG ...	LSR ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231
9120	81	CTG ...	LAV ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HEK293, hES, LCL, MDA-MB-231, RPE-1
936022	66	ATG ...	MVC ...	Ribo-seq	ATG	strong	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, MDA-MB-231, RPE-1
936017	30	CTG ...	LTT ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, hES, MDA-MB-231, RPE-1
941738	276	CTG ...	LPQ ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, MDA-MB-231
903293	69	CAT ...	HPQ ...	Ribo-seq	CAT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
941725	174	ATG ...	MTV ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, MDA-MB-231
2103	60	CTG ...	LHR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, MDA-MB-231
2310082	30	ATG ...	MPC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231
936010	63	TTG ...	LSP ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	Brain, MDA-MB-231
936028	87	CTG ...	LCS ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, MDA-MB-231
1503731	117	GTG ...	VPG ...	Ribo-seq	GTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, MDA-MB-231, RPE-1
936034	153	CTG ...	LHF ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain
941734	138	CTG ...	LWS ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	Brain, MDA-MB-231
903289	36	GTC ...	VMT ...	Ribo-seq	GTC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1722548	84	GTG ...	VLA ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1722550	33	CTG ...	LDI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
940491	108	CTG ...	LAP ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, MDA-MB-231
481625	54	TTG ...	LKT ...	Ribo-seq	TTG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, HEK293, HEK293T, MDA-MB-231, RPE-1
936012	168	GTG ...	VSR ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	Brain
282228	45	CTG ...	LVC ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	InCDS Overlapping sORF	Blood, LCL, MDA-MB-231, RPE-1
282222	57	CTG ...	LSS ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	InCDS Overlapping sORF	BJ, Brain, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231
282210	33	ATG ...	MTL ...	Ribo-seq	ATG	moderate	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
282208	39	TTG ...	LVM ...	Ribo-seq	TTG	moderate	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
2310092	54	GTG ...	VLW ...	Ribo-seq	GTG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
903295	36	TCA ...	SRR ...	Ribo-seq	TCA	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
936032	159	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain
941732	141	GTG ...	VLW ...	Ribo-seq	GTG		2	sORFs_org_Human	InCDS Overlapping sORF	Brain, MDA-MB-231
282202	105	GTG ...	VTR ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, LCL, MDA-MB-231

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