Transcript 284061

Transcript

ID CARD

MetamORF ID

284061

ENST00000323959

Name

CSTF3-201

Strand

Biotype

protein_coding

Start-end positions

33084584-33161465

CDS Start-stop positions

33085087-33161325

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:2485

Aliases

CstF-77,
CSTF3, ENSG00000176102, HGNC:2485,
NCBI:1479, OFF:CSTF3

Chr 11

ORFs

45 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1049343	90	CTG ...	LAD ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, RPE-1
2326466	111	TTG ...	LLM ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1204979	87	TTG ...	LCW ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	HAP1, MDA-MB-231
2326454	42	TTG ...	LSS ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2326456	54	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
293221	84	ATG ...	MSM ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
293219	78	ATG ...	MLL ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
2326460	72	CTG ...	LIF ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1731022	63	TTG ...	LTI ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	Blood
2312641	51	ATG ...	MKW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2312639	48	CTG ...	LYL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2326452	81	ATG ...	MKR ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
2312664	69	CTG ...	LIF ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
1724027	108	TTG ...	LLM ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
2312644	33	TTG ...	LTI ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2312646	48	ATG ...	MSW ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2312660	51	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2326447	96	ATG ...	MET ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
2809705	69	CTG ...	LFL ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	RPE-1
284060	36	CTG ...	LQH ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
634090	42	CTG ...	LSE ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, hES, THP-1
284069	30	GTG ...	VPA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, THP-1
2326464	105	ATG ...	MNS ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2312650	30	TTG ...	LPL ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2326469	66	TTG ...	LKQ ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231, RPE-1
1724029	60	GTG ...	VGK ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
293217	72	CTG ...	LQH ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
2326462	90	TTG ...	LCW ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1049345	108	TTG ...	LPS ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, RPE-1
284071	42	TTG ...	LNS ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, hES, LCL, MDA-MB-231
284063	42	ATG ...	MLL ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231
2326458	60	ATG ...	MKL ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
284067	39	TTG ...	LHG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
284065	48	ATG ...	MSM ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231
2312658	51	ATG ...	MPN ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2312662	57	ATG ...	MKL ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
1731020	33	TTG ...	LVI ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1724031	78	GTG ...	VEE ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
293215	51	CTG ...	LEA ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL
2312648	66	ATG ...	MET ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1724022	66	ATG ...	MKR ...	Ribo-seq	ATG		4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, RPE-1
2312652	33	CTG ...	LLP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1724025	102	ATG ...	MNS ...	Ribo-seq	ATG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
1049347	111	TTG ...	LLP ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, RPE-1
293223	57	TTG ...	LNS ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231

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