Transcript 2077 | MetamORF

Transcript

ID CARD

MetamORF ID

2077

ENST00000322028

Name

POLR2L-201

Strand

Biotype

protein_coding

Start-end positions

839721-842545

CDS Start-stop positions

840372-842508

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

HGNC:9199

Aliases

ENSG00000177700,
HGNC:9199, hRPB7.6, hsRPB10b,
NCBI:5441, OFF:POLR2L, POLR2L,
RBP10, RPABC5, RPB10beta,
RPB7.6

Chr 11

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
409810	60	ACC ...	TWG ...	Ribo-seq	ACC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
2083	114	CTG ...	LYA ...	Ribo-seq	CTG		30	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
406577	273	CTG ...	LLH ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HCT116, Jurkat
2079	108	CTG ...	LLP ...	Ribo-seq	CTG	weak	33	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
9059	93	GTG ...	VAR ...	Ribo-seq	GTG		33	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1818722	42	GTG ...	VCI ...	Ribo-seq	GTG	weak	2	sORFs_org_Human	Alternative Downstream sORF	HeLa, MDA-MB-231
406575	63	ACC ...	TWG ...	Ribo-seq	ACC		1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
2076	105	CTG ...	LPP ...	Ribo-seq	CTG	weak	33	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
406569	99	CCG ...	PDA ...	Ribo-seq	CCG	moderate	4	sORFs_org_Human	Alternative Downstream Overlapping sORF	HCT116, HeLa, Jurkat, THP-1
409806	42	CCG ...	PST ...	Ribo-seq	CCG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
406567	108	AGA ...	RSC ...	Ribo-seq	AGA	weak	4	sORFs_org_Human	Alternative Downstream Overlapping sORF	HCT116, HeLa, Jurkat, THP-1
1301535	288	GAT ...	DHP ...	Ribo-seq	GAT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
409808	51	TGC ...	CCR ...	Ribo-seq	TGC		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
406571	45	CCG ...	PST ...	Ribo-seq	CCG		1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
903258	123	GGG ...	GPE ...	Ribo-seq	GGG	weak	3	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa, Jurkat, THP-1
9061	111	CTG ...	LYA ...	Ribo-seq	CTG		34	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1315804	48	GTG ...	VLT ...	Ribo-seq	GTG	moderate	13	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
406573	54	TGC ...	CCR ...	Ribo-seq	TGC		2	sORFs_org_Human	InCDS Overlapping sORF	HCT116, Jurkat
1722489	102	CTG ...	LPR ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative Downstream sORF	Blood, HeLa, MDA-MB-231
282169	93	ATG ...	MHP ...	Ribo-seq	ATG	moderate	20	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
633440	39	ATG ...	MGP ...	Ribo-seq	ATG	strong	16	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, Monocyte, RPE-1, THP-1
2616096	42	GCT ...	ATA ...	Ribo-seq	GCT	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, THP-1
3311863	204	ATG ...	MII ...	Predicted	ATG		1	Mackowiak2015	CDS sORF
2081	96	GTG ...	VAR ...	Ribo-seq	GTG		28	sORFs_org_Human	InCDS Overlapping sORF	BJ, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
1722491	111	CTG ...	LSV ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative Downstream sORF	Blood, HeLa, MDA-MB-231
1315802	45	CTG ...	LTM ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	Alternative Downstream sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1818729	36	GTG ...	VTT ...	Ribo-seq	GTG	moderate	7	sORFs_org_Human	Alternative Downstream Overlapping sORF	HEK293, HeLa, hES, MDA-MB-231, RPE-1

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