Transcript 308576

Transcript

ID CARD

MetamORF ID

308576

ENST00000315579

Name

NCAPD2-201

Strand

Biotype

protein_coding

Start-end positions

6493379-6531955

CDS Start-stop positions

6495099-6531412

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

HGNC:24305

Aliases

CAP-D2,
CNAP1, ENSG00000010292, hCAP-D2,
HGNC:24305, KIAA0159, NCAPD2,
NCBI:9918, OFF:NCAPD2

Chr 12

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
308591	138	TTG ...	LSG ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
543379	90	CTG ...	LHD ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, THP-1, U2OS
2345520	135	CTG ...	LPW ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231, RPE-1
308597	189	CTG ...	LDS ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
308578	102	TTG ...	LWT ...	Ribo-seq	TTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
451909	30	GTG ...	VSA ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	guo_2014, HEK293, HEK293T, THP-1
308593	117	TTG ...	LPL ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231, RPE-1
1521367	54	ATG ...	MLV ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, MDA-MB-231, RPE-1
2345518	138	TTG ...	LLP ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231, RPE-1
308575	129	TTG ...	LRP ...	Ribo-seq	TTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
308595	111	CTG ...	LGI ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, LCL, MDA-MB-231, RPE-1

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