Transcript 533755

Transcript

ID CARD

MetamORF ID

533755

ENST00000308020

Name

PTDSS2-201

Strand

Biotype

protein_coding

Start-end positions

450280-491387

CDS Start-stop positions

450456-490582

CDS Relative positions

Sequences

Transcript sequence

CAA ...

Genome browsers

UCSC

Gene

HGNC:15463

Aliases

ENSG00000174915,
HGNC:15463, NCBI:81490, OFF:PTDSS2,
PSS2, PTDSS2

Chr 11

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
533754	153	ATG ...	MLT ...	Ribo-seq	ATG		3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, U2OS
533769	75	CTG ...	LAL ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, RPE-1, U2OS
916066	51	AGG ...	RST ...	Ribo-seq	AGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2548339	150	TTG ...	LTP ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
533763	117	GTG ...	VLD ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231, U2OS
533765	114	CTG ...	LDP ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231, U2OS
2326893	102	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
533757	78	ATG ...	MRL ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, U2OS
533767	84	CTG ...	LDR ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231, RPE-1, U2OS
916064	90	CCA ...	PPG ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1731539	69	GTG ...	VWS ...	Ribo-seq	GTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
533761	213	CTG ...	LAG ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	U2OS

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