Transcript 4240 | MetamORF

Transcript

ID CARD

MetamORF ID

4240

ENST00000305885

Name

FEN1-201

Strand

Biotype

protein_coding

Start-end positions

61792637-61797244

CDS Start-stop positions

61795362-61796504

CDS Relative positions

414-1556

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

HGNC:3650

Aliases

ENSG00000168496,
FEN-1, FEN1, HGNC:3650,
MF1, NCBI:2237, OFF:FEN1,
RAD2

Chr 11

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
908009	48	CCT ...	PHL ...	Ribo-seq	CCT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
4242	66	CTG ...	LAK ...	Ribo-seq	CTG	strong	16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
1317006	132	GTG ...	VAS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative sORF Upstream	HEK293, HeLa
908007	57	TCT ...	SML ...	Ribo-seq	TCT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
4246	51	CTG ...	LRL ...	Ribo-seq	CTG	moderate	16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
908011	30	TGT ...	CAN ...	Ribo-seq	TGT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
482293	87	CTG ...	LNV ...	Ribo-seq	CTG	weak	8	sORFs_org_Human	Alternative sORF Upstream	BJ, HEK293, HEK293T, HeLa, loayza_puch_2016, MDA-MB-231, RPE-1
286131	42	ATG ...	MCC ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
4248	51	CTG ...	LPH ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, THP-1, U2OS
482300	42	ATG ...	MHP ...	Ribo-seq	ATG	weak	3	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HEK293T, HeLa, HFF
1821282	111	ATG ...	MGR ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
3307549	1143	ATG ...	MGI ...	Ribo-seq	ATG	strong	1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
4226	147	ATG ...	MSL ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
4239	108	CTG ...	LCC ...	Ribo-seq	CTG	weak	12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, THP-1, U2OS
1047691	45	TTG ...	LMH ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
4244	54	ATG ...	MLR ...	Ribo-seq	ATG	weak	17	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
482295	60	CTG ...	LRR ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	Alternative sORF Upstream	BJ, HAP1, HEK293, HEK293T, HeLa, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
1317004	138	CTG ...	LCV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	Alternative sORF Upstream	HEK293, HeLa
1208496	72	GTG ...	VSQ ...	Ribo-seq	GTG		5	sORFs_org_Human	Overlapping sORF Upstream	BJ, HAP1, HEK293, HeLa
916330	78	GGC ...	GRV ...	Ribo-seq	GGC		1	sORFs_org_Human	Overlapping sORF Upstream	Jurkat

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