Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

4458

ID

ENST00000301785

Name

HNRNPUL2-201

Strand

-

Biotype

protein_coding

Start-end positions

62712630-62727349

CDS Start-stop positions

62715299-62727156

CDS Relative positions

-

Sequences

Transcript sequence

ACG ...

Gene

ID

HGNC:25451

Aliases

DKFZp762N1910,
ENSG00000214753, HGNC:25451, HNRNPUL2,
HNRPUL2, NCBI:221092, OFF:HNRNPUL2


Chr 11

ORFs

109 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

407778 54

ACC ...

TLR ...

Ribo-seq
ACC moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116
482419 72

ATG ...

MEG ...

Ribo-seq
ATG strong 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF
8486 75

TTG ...

LRN ...

Ribo-seq
TTG 18 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
hES, LCL, MDA-MB-231,
MM1S, RPE-1
294446 84

ATG ...

MDN ...

Ribo-seq
ATG 17 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
hES, LCL, MDA-MB-231,
MM1S, RPE-1
8480 153

TTG ...

LLP ...

Ribo-seq
TTG 17 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1
1506757 129

CTG ...

LLK ...

Ribo-seq
CTG weak 7 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, hES, MDA-MB-231,
RPE-1
3222926 78

ATG ...

MNM ...

Ribo-seq
ATG 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HeLa
908463 75

GCG ...

AGS ...

Ribo-seq
GCG 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
4464 42

TTG ...

LSL ...

Ribo-seq
TTG weak 15 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, HAP1, HCT116,
HEK293, HeLa, hES,
LCL, MDA-MB-231, MM1S,
RPE-1
4482 66

TTG ...

LCS ...

Ribo-seq
TTG moderate 14 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1
409616 291

GCG ...

AGS ...

Ribo-seq
GCG 2 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
HCT116, Jurkat
4466 99

CTG ...

LAN ...

Ribo-seq
CTG strong 14 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1
105252 159

ATG ...

MST ...

Ribo-seq
ATG 19 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1
407784 87

GAC ...

DED ...

Ribo-seq
GAC 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116
8494 159

TTG ...

LIF ...

Ribo-seq
TTG 19 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1
286624 165

ATG ...

MVA ...

Ribo-seq
ATG 4 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, hES, LCL,
MM1S
286565 51

ATG ...

MST ...

Ribo-seq
ATG 21 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1
1821499 42

CTG ...

LPV ...

Ribo-seq
CTG moderate 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
3200515 135

TTC ...

FPG ...

Ribo-seq
TTC moderate 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293
286598 36

TTG ...

LGR ...

Ribo-seq
TTG 14 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Brain, HEK293,
HEK293T, HeLa, LCL,
MDA-MB-231, MM1S, RPE-1,
U2OS
407771 72

ATC ...

IDF ...

Ribo-seq
ATC 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116
908473 48

AGA ...

RLL ...

Ribo-seq
AGA 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
407795 273

GAT ...

DGG ...

Ribo-seq
GAT strong 3 sORFs_org_Human
    Overlapping
    sORF
    Upstream
BJ, HCT116, Jurkat
3201206 255

GGC ...

GSS ...

Ribo-seq
GGC 1 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
HEK293
286610 117

GTG ...

VKM ...

Ribo-seq
GTG 21 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, loayza_puch_2016,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
8478 204

ATG ...

MID ...

Ribo-seq
ATG 26 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1
294456 111

ATG ...

MAE ...

Ribo-seq
ATG 11 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
LCL, MDA-MB-231, RPE-1,
THP-1
4468 111

ATG ...

MCT ...

Ribo-seq
ATG moderate 16 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain_tumor,
HAP1, HEK293, HEK293T,
HeLa, HFF, LCL,
MDA-MB-231, MM1S, RPE-1
286570 45

TTG ...

LEE ...

Ribo-seq
TTG strong 12 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, HEK293, HeLa,
hES, LCL, MDA-MB-231,
MM1S, RPE-1
286606 90

ATG ...

MDE ...

Ribo-seq
ATG 21 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, loayza_puch_2016,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
908465 33

GAC ...

DKS ...

Ribo-seq
GAC moderate 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
4476 45

CTG ...

LLR ...

Ribo-seq
CTG weak 13 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S
4470 45

TTG ...

LLP ...

Ribo-seq
TTG 14 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S
286600 48

TTG ...

LAR ...

Ribo-seq
TTG 17 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Brain, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
MM1S, RPE-1, U2OS
286578 36

ATG ...

MSW ...

Ribo-seq
ATG moderate 21 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
guo_2014, HAP1, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
RPE-1, U2OS
1506749 48

GTG ...

VKS ...

Ribo-seq
GTG moderate 3 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, MDA-MB-231, RPE-1
409612 168

GGC ...

GEI ...

Ribo-seq
GGC 1 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
HCT116
8484 66

TTG ...

LAR ...

Ribo-seq
TTG 19 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
hES, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1
908481 114

AAG ...

KMN ...

Ribo-seq
AAG 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
409614 180

ATC ...

IDF ...

Ribo-seq
ATC 1 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
HCT116
8488 108

ATG ...

MDE ...

Ribo-seq
ATG 21 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
hES, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1,
U2OS
8502 174

GTG ...

VAK ...

Ribo-seq
GTG 12 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1
3200513 30

AGA ...

RWT ...

Ribo-seq
AGA weak 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293
286580 51

CTG ...

LRK ...

Ribo-seq
CTG moderate 18 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1, U2OS
908479 159

TGT ...

CGI ...

Ribo-seq
TGT strong 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
286604 66

ATG ...

MDN ...

Ribo-seq
ATG 16 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
LCL, MDA-MB-231, MM1S,
RPE-1, U2OS
286612 54

TTG ...

LGG ...

Ribo-seq
TTG 6 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HAP1, HEK293, HeLa,
Jurkat, LCL
908496 255

GAA ...

ESD ...

Ribo-seq
GAA moderate 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
286591 90

TTG ...

LCC ...

Ribo-seq
TTG moderate 17 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, Brain, HAP1,
HEK293, HEK293T, HeLa,
hES, LCL, MDA-MB-231,
RPE-1, THP-1
4480 54

ATG ...

MLC ...

Ribo-seq
ATG weak 14 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Brain_tumor, HAP1,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
MM1S, RPE-1
8476 183

ATG ...

MID ...

Ribo-seq
ATG 23 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, loayza_puch_2016, MDA-MB-231,
RPE-1
1596639 81

CTG ...

LRG ...

Ribo-seq
CTG weak 2 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
loayza_puch_2016, MM1S
1512351 117

CTG ...

LSE ...

Ribo-seq
CTG 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ
8500 126

ATG ...

MRR ...

Ribo-seq
ATG 14 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain_tumor,
HAP1, HEK293, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1, THP-1
8504 177

ATG ...

MVA ...

Ribo-seq
ATG 13 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain_tumor,
HAP1, HEK293, HeLa,
hES, HFF, LCL,
MDA-MB-231, MM1S, RPE-1
1506755 48

ATG ...

MLP ...

Ribo-seq
ATG weak 7 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Brain_tumor, HEK293,
HeLa, HFF, MDA-MB-231,
RPE-1
409620 105

GAC ...

DED ...

Ribo-seq
GAC 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116
908475 69

AGT ...

SLC ...

Ribo-seq
AGT moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
1506761 237

CTG ...

LWP ...

Ribo-seq
CTG moderate 4 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, hES, MDA-MB-231,
RPE-1
908499 57

CGG ...

RPP ...

Ribo-seq
CGG moderate 1 sORFs_org_Human
    Alternative
    sORF
    Upstream
Jurkat
4457 75

ATG ...

MID ...

Ribo-seq
ATG 25 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
hES, HFF, LCL,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1
286602 57

TTG ...

LRN ...

Ribo-seq
TTG 17 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HEK293T,
HeLa, hES, LCL,
MDA-MB-231, MM1S, RPE-1
294461 87

GTG ...

VTR ...

Ribo-seq
GTG 8 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, HAP1, hES,
LCL, MDA-MB-231, MM1S,
RPE-1
4462 30

CTG ...

LKN ...

Ribo-seq
CTG weak 15 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1
3200504 69

ACT ...

TTG ...

Ribo-seq
ACT moderate 1 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
HEK293
286572 33

ATG ...

MRK ...

Ribo-seq
ATG weak 12 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, HEK293, HeLa,
hES, LCL, MDA-MB-231,
MM1S, RPE-1
409618 51

GGG ...

GRM ...

Ribo-seq
GGG 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116
407782 33

GGG ...

GRM ...

Ribo-seq
GGG 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116
8496 162

CTG ...

LLI ...

Ribo-seq
CTG 20 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HCT116, HEK293, HeLa,
hES, LCL, MDA-MB-231,
MM1S, RPE-1, THP-1
3314932 2244

ATG ...

MEV ...

Ribo-seq
ATG 1 Johnstone2016
    CDS
Brain_tumor, HEK293, HeLa,
HFF
1821497 63

CTG ...

LFY ...

Ribo-seq
CTG weak 1 sORFs_org_Human
    Downstream
    sORF
HeLa
4460 96

ATG ...

MID ...

Ribo-seq
ATG 25 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HEK293T,
HeLa, hES, HFF,
LCL, loayza_puch_2016, MDA-MB-231,
MM1S, RPE-1
286622 162

GTG ...

VAK ...

Ribo-seq
GTG 4 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, hES, LCL,
MM1S
1506759 156

TTG ...

LRT ...

Ribo-seq
TTG weak 6 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
hES, MDA-MB-231, RPE-1
8490 129

ATG ...

MNS ...

Ribo-seq
ATG 23 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain_tumor,
HAP1, HCT116, HEK293,
HEK293T, HeLa, hES,
HFF, LCL, loayza_puch_2016,
MDA-MB-231, MM1S, RPE-1,
THP-1
1989053 45

CTG ...

LLI ...

Ribo-seq
CTG 2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, HeLa
1821501 66

TTG ...

LRR ...

Ribo-seq
TTG weak 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
916427 132

AAG ...

KMN ...

Ribo-seq
AAG 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
908501 72

CAG ...

QRD ...

Ribo-seq
CAG moderate 1 sORFs_org_Human
    Alternative
    sORF
    Upstream
Jurkat
908477 60

GGA ...

GGA ...

Ribo-seq
GGA strong 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
908471 57

GCG ...

AEA ...

Ribo-seq
GCG strong 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
8492 135

GTG ...

VKM ...

Ribo-seq
GTG 19 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1
4474 42

TTG ...

LRS ...

Ribo-seq
TTG weak 14 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
RPE-1
407793 45

GGA ...

GGR ...

Ribo-seq
GGA strong 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HCT116
8482 54

TTG ...

LGR ...

Ribo-seq
TTG 17 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HAP1, HEK293, HeLa,
hES, LCL, MDA-MB-231,
MM1S, RPE-1
407776 30

TGG ...

WEL ...

Ribo-seq
TGG moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116
286608 111

ATG ...

MNS ...

Ribo-seq
ATG 22 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HCT116, HEK293, HEK293T,
HeLa, hES, LCL,
loayza_puch_2016, MDA-MB-231, MM1S,
RPE-1, THP-1, U2OS
4472 33

GTG ...

VYA ...

Ribo-seq
GTG moderate 14 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HeLa, hES, HFF,
MDA-MB-231, MM1S
908467 33

GGA ...

GEG ...

Ribo-seq
GGA strong 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
407767 36

ACA ...

TET ...

Ribo-seq
ACA 3 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116, HEK293, Jurkat
286593 99

CTG ...

LQK ...

Ribo-seq
CTG weak 15 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, Brain, HAP1,
HEK293, HeLa, hES,
LCL, MDA-MB-231, RPE-1,
THP-1
3200508 69

CAG ...

QIQ ...

Ribo-seq
CAG 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293
4486 42

CTG ...

LHR ...

Ribo-seq
CTG moderate 17 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain,
HAP1, HEK293, HeLa,
hES, HFF, LCL,
MDA-MB-231, MM1S, RPE-1,
THP-1
916425 156

AGA ...

RLL ...

Ribo-seq
AGA 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
286595 150

CTG ...

LDQ ...

Ribo-seq
CTG strong 14 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HeLa, hES, LCL,
MDA-MB-231, RPE-1, THP-1
286582 66

ATG ...

MQK ...

Ribo-seq
ATG moderate 16 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain_tumor,
HAP1, HEK293, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1
286626 105

CTG ...

LQG ...

Ribo-seq
CTG moderate 7 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, HeLa, hES,
LCL, MM1S
409610 144

ACA ...

TET ...

Ribo-seq
ACA 3 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
HCT116, HEK293, Jurkat
4484 81

GTG ...

VWH ...

Ribo-seq
GTG weak 14 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
LCL, MDA-MB-231, RPE-1
294454 96

ATG ...

MNS ...

Ribo-seq
ATG 9 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, hES, LCL,
MDA-MB-231, RPE-1
294458 117

ATG ...

MNM ...

Ribo-seq
ATG 11 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HEK293, HeLa, hES,
LCL, MDA-MB-231, RPE-1,
THP-1
4478 51

CTG ...

LCL ...

Ribo-seq
CTG moderate 13 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231, MM1S,
RPE-1
286584 33

GTG ...

VGT ...

Ribo-seq
GTG moderate 11 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231, RPE-1
1725971 45

CTG ...

LRA ...

Ribo-seq
CTG weak 5 sORFs_org_Human
    Alternative
    sORF
    Upstream
Blood, HEK293, hES,
MDA-MB-231, RPE-1
3200510 39

GGC ...

GSS ...

Ribo-seq
GGC 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293
1506747 87

ATG ...

MRR ...

Ribo-seq
ATG 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ
8498 171

TTG ...

LGG ...

Ribo-seq
TTG 22 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HAP1,
HCT116, HEK293, HEK293T,
HeLa, hES, Jurkat,
LCL, MDA-MB-231, MM1S,
RPE-1, THP-1
407769 60

GGC ...

GEI ...

Ribo-seq
GGC 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HCT116
1506751 60

ATG ...

MTR ...

Ribo-seq
ATG moderate 4 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, hES, MDA-MB-231,
RPE-1

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS