Transcript 284387

Transcript

ID CARD

MetamORF ID

284387

ENST00000299413

Name

TRIM44-201

Strand

Biotype

protein_coding

Start-end positions

35662805-35818007

CDS Start-stop positions

35663112-35806385

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

HGNC:19016

Aliases

DIPB,
ENSG00000166326, HGNC:19016, MC7,
NCBI:54765, OFF:TRIM44, TRIM44

Chr 11

ORFs

55 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1820387	66	ATG ...	MAR ...	Ribo-seq	ATG	strong	2	sORFs_org_Human Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
634255	96	CTG ...	LPP ...	Ribo-seq	CTG	weak	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
1820415	63	ATG ...	MPS ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
1820419	54	CTG ...	LLS ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
905941	54	GGC ...	GLW ...	Ribo-seq	GGC	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, Jurkat
1820395	204	CTG ...	LKP ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1987677	33	CTG ...	LRQ ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, MDA-MB-231, RPE-1
284391	153	GTG ...	VRM ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL, MDA-MB-231, RPE-1, U2OS
284386	78	TTG ...	LAA ...	Ribo-seq	TTG	strong	16	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1820405	36	TTG ...	LNF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
527455	297	TTG ...	LRG ...	Ribo-seq	TTG	moderate	11	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HeLa, hES, MDA-MB-231, MM1S, RPE-1, U2OS
1820381	57	CTG ...	LPA ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1439731	111	ATG ...	MRL ...	Ribo-seq	ATG	moderate	9	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1820379	81	CTG ...	LHW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1820399	30	ATG ...	MFP ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
284401	69	CTG ...	LCP ...	Ribo-seq	CTG	weak	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
1820389	51	TTG ...	LVL ...	Ribo-seq	TTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1505192	222	GTG ...	VTS ...	Ribo-seq	GTG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, hES, MDA-MB-231, RPE-1
1820397	165	ATG ...	MNV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
905945	117	CCG ...	PRM ...	Ribo-seq	CCG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1820417	42	GTG ...	VFL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1505194	120	GTG ...	VPR ...	Ribo-seq	GTG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, MDA-MB-231, RPE-1
1724348	36	TTG ...	LGL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1820385	39	GTG ...	VTC ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
284403	60	GTG ...	VSS ...	Ribo-seq	GTG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, LCL, MDA-MB-231, RPE-1
527457	237	TTG ...	LLL ...	Ribo-seq	TTG	weak	10	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HeLa, hES, MDA-MB-231, MM1S, RPE-1, U2OS
1820411	42	GTG ...	VLG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1820407	99	CTG ...	LDA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
905947	63	GTT ...	VPQ ...	Ribo-seq	GTT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
905949	72	AGA ...	RLR ...	Ribo-seq	AGA	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1820413	36	ATG ...	MNL ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
527459	234	CTG ...	LLR ...	Ribo-seq	CTG	weak	10	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HeLa, hES, MDA-MB-231, MM1S, RPE-1, U2OS
1505199	144	ATG ...	MPR ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231, RPE-1
284399	99	ATG ...	MSK ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL, MDA-MB-231, RPE-1
1505201	63	CTG ...	LTE ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, RPE-1
527461	231	CTG ...	LRP ...	Ribo-seq	CTG	weak	10	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HeLa, hES, MDA-MB-231, MM1S, RPE-1, U2OS
1820401	54	CTG ...	LAI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1820409	75	TTG ...	LIS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1820383	45	CTG ...	LPV ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
284393	147	ATG ...	MRA ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1, U2OS
284389	207	GTG ...	VSR ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL, MDA-MB-231, RPE-1, U2OS
1724345	54	GTG ...	VSC ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231
284397	129	GTG ...	VKK ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL, MDA-MB-231, RPE-1, U2OS
1505190	267	CTG ...	LEW ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, MDA-MB-231, RPE-1
1820403	39	ATG ...	MLN ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
407235	81	GCT ...	AAP ...	Ribo-seq	GCT	strong	1	sORFs_org_Human	Alternative sORF Upstream	HCT116
1505181	207	CTG ...	LSG ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative sORF Upstream	BJ, RPE-1
1820393	33	CTG ...	LQR ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
284395	138	ATG ...	MRR ...	Ribo-seq	ATG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL, MDA-MB-231, RPE-1, U2OS
1505187	63	CTG ...	LPR ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	Alternative sORF Upstream	BJ, HeLa, hES, MDA-MB-231, MM1S, RPE-1
905943	231	ACG ...	TAR ...	Ribo-seq	ACG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1439733	102	CTG ...	LLL ...	Ribo-seq	CTG	weak	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, MDA-MB-231, RPE-1
905939	291	CGC ...	RVT ...	Ribo-seq	CGC	strong	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
1724338	156	GTG ...	VRA ...	Ribo-seq	GTG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, MDA-MB-231, RPE-1
1820391	48	GTG ...	VLY ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa

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