Transcript 292 | MetamORF

Transcript

ID CARD

MetamORF ID

292

ENST00000298746

Name

TRUB1-201

Strand

Biotype

protein_coding

Start-end positions

114938193-114977676

CDS Start-stop positions

114938254-114975379

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

HGNC:16060

Aliases

ENSG00000165832,
HGNC:16060, NCBI:142940, OFF:TRUB1,
PUS4, TRUB1

Chr 10

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
899240	258	AAT ...	NGC ...	Ribo-seq	AAT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
278594	96	ATG ...	MTL ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
98762	69	ATG ...	MKQ ...	Ribo-seq	ATG	moderate	20	sORFs_org_Human Johnstone2016	Alternative Overlapping sORF Upstream	BJ, Blood, Brain, Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
899238	159	CAG ...	QTH ...	Ribo-seq	CAG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
899256	51	CAG ...	QSW ...	Ribo-seq	CAG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
278588	126	ATG ...	MPF ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231
899242	246	CCC ...	PVS ...	Ribo-seq	CCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
278590	117	CTG ...	LKT ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
3300820	1050	ATG ...	MAA ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
1134539	72	CTG ...	LCQ ...	Ribo-seq	CTG	weak	8	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, hES, MDA-MB-231, RPE-1
405377	51	GAC ...	DPN ...	Ribo-seq	GAC	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
524836	36	TTG ...	LLI ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	InCDS Overlapping sORF	HEK293, hES, THP-1, U2OS
2092217	75	TTG ...	LRP ...	Ribo-seq	TTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
278596	90	TTG ...	LHS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
899236	33	GTC ...	VFE ...	Ribo-seq	GTC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
278586	39	ATG ...	MWR ...	Ribo-seq	ATG	weak	6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1
2303567	78	TTG ...	LSI ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1719815	36	TTG ...	LKA ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, RPE-1
291	33	CTG ...	LRR ...	Ribo-seq	CTG	weak	12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
1134537	51	CTG ...	LYT ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, MDA-MB-231
278592	99	TTG ...	LMT ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231

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