Transcript 8811 | MetamORF

Transcript

ID CARD

MetamORF ID

8811

ENST00000279146

Name

AIP-201

Strand

Biotype

protein_coding

Start-end positions

67483041-67491103

CDS Start-stop positions

67483159-67490993

CDS Relative positions

Sequences

Transcript sequence

CCC ...

Genome browsers

UCSC

Gene

HGNC:358

Aliases

AIP,
ARA9, ENSG00000110711, FKBP16,
HGNC:358, NCBI:9049, OFF:AIP,
XAP2

Chr 11

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1732559	195	ATG ...	MDP ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
288264	75	GTG ...	VQA ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
8815	255	CTG ...	LCG ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
8813	276	TTG ...	LAR ...	Ribo-seq	TTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
8817	213	TTG ...	LPS ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231, RPE-1
2318221	45	TTG ...	LPK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
8819	198	GTG ...	VTS ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231, RPE-1
1732563	144	GTG ...	VQA ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
916731	297	GCA ...	ASP ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
8810	300	GTG ...	VAS ...	Ribo-seq	GTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
1732561	150	CTG ...	LPV ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
2318219	51	CTG ...	LTL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
3308860	993	ATG ...	MAD ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
1508111	81	CTG ...	LPV ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
1727165	69	ATG ...	MPR ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
1048222	33	ATG ...	MPL ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1732565	102	CTG ...	LLF ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, RPE-1
103061	33	ATG ...	MAL ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative sORF Upstream	Brain_tumor, HEK293, HeLa, HFF

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