Transcript 1490 | MetamORF

Transcript

ID CARD

MetamORF ID

1490

ENST00000277865

Name

GLUD1-201

Strand

Biotype

protein_coding

Start-end positions

87050486-87094866

CDS Start-stop positions

87051751-87094769

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:4335

Aliases

ENSG00000148672,
GDH, GLUD, GLUD1,
HGNC:4335, NCBI:2746, OFF:GLUD1

Chr 10

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1492	57	CTG ...	LAW ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
281223	138	ATG ...	MVE ...	Ribo-seq	ATG		7	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain, Brain_tumor, HAP1, HEK293, HeLa, HFF, LCL
1816668	48	CTG ...	LDE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
935622	147	TTG ...	LES ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HEK293
1498	120	TTG ...	LYP ...	Ribo-seq	TTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
95785	57	CTG ...	LPM ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HEK293, HFF
934227	51	ATG ...	MLM ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain, Brain_tumor, HEK293, HeLa, HFF
3303298	1677	ATG ...	MYR ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
281227	75	ATG ...	MGQ ...	Ribo-seq	ATG		12	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain, Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HeLa, HFF, LCL, RPE-1, THP-1
281221	135	GTG ...	VEL ...	Ribo-seq	GTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, LCL, RPE-1
3199834	42	TCC ...	SWR ...	Ribo-seq	TCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
1816664	45	GTG ...	VEA ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
275978	39	TTG ...	LYP ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, LCL
896939	186	CGT ...	RCW ...	Ribo-seq	CGT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
281225	54	CTG ...	LTR ...	Ribo-seq	CTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
896937	210	CGT ...	RGG ...	Ribo-seq	CGT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
934244	219	CTG ...	LPW ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain
276001	48	GTG ...	VSG ...	Ribo-seq	GTG	weak	12	sORFs_org_Human	InCDS Overlapping sORF	Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, HFF, LCL, THP-1
95787	30	CTG ...	LAL ...	Ribo-seq	CTG	strong	17	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
281233	90	TTG ...	LLK ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HAP1, HEK293, LCL
1494	78	CTG ...	LRK ...	Ribo-seq	CTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
934246	276	TTG ...	LWP ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	Alternative Overlapping sORF Upstream	Brain, MDA-MB-231
1816666	48	ATG ...	MVE ...	Ribo-seq	ATG	strong	2	sORFs_org_Human Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
1489	30	CTG ...	LPG ...	Ribo-seq	CTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
896935	30	TGT ...	CAC ...	Ribo-seq	TGT	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
934223	39	TTG ...	LRK ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain
404766	186	CCT ...	PED ...	Ribo-seq	CCT		1	sORFs_org_Human	InCDS Overlapping sORF	HCT116
281229	81	GTG ...	VPM ...	Ribo-seq	GTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Brain, Flp-In_T-REx-293, HAP1, HEK293, LCL, RPE-1, THP-1
1496	84	GTG ...	VHL ...	Ribo-seq	GTG		17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
934225	45	ATG ...	MPL ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain
934230	96	GTG ...	VHL ...	Ribo-seq	GTG		2	sORFs_org_Human	InCDS Overlapping sORF	Brain, HeLa
281231	87	CTG ...	LKV ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, Flp-In_T-REx-293, HAP1, HEK293, LCL

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