Transcript 96403 | MetamORF

Transcript

ID CARD

MetamORF ID

96403

ENST00000277632

Name

MINDY3-201

Strand

Biotype

protein_coding

Start-end positions

15778170-15860520

CDS Start-stop positions

15778992-15860299

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

HGNC:23578

Aliases

C10orf97,
CARP, DERP5, ENSG00000148481,
FAM188A, FLJ13397, HGNC:23578,
MINDY3, my042, NCBI:80013,
OFF:MINDY3

Chr 10

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1720717	51	TTG ...	LKV ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1720703	90	CTG ...	LGV ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1720715	45	GTG ...	VAP ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1716254	39	GTG ...	VTT ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1716252	30	CTG ...	LDH ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1305391	54	AGG ...	RSP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ
94642	48	ATG ...	MLF ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1720705	102	CTG ...	LLV ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1720713	111	TTG ...	LCK ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1720707	111	CTG ...	LRK ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
1716241	84	ATG ...	MTL ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1716258	36	GTG ...	VAP ...	Ribo-seq	GTG		1	sORFs_org_Human	InCDS Overlapping sORF	Blood
273254	48	GTG ...	VLV ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231
404014	111	CCG ...	PPP ...	Ribo-seq	CCG	weak	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HCT116
1720701	81	CTG ...	LQS ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
2295507	36	CTG ...	LLG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
96402	66	ATG ...	MFR ...	Ribo-seq	ATG	weak	19	sORFs_org_Human Johnstone2016	Alternative Overlapping sORF Upstream	BJ, Blood, Brain, Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
273256	33	TTG ...	LCL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
1132734	135	CTG ...	LPH ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293, HeLa, RPE-1
2536462	75	ATG ...	MLS ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1132732	114	TTG ...	LPP ...	Ribo-seq	TTG	weak	5	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HEK293, RPE-1
1716249	36	ATG ...	MDS ...	Ribo-seq	ATG	strong	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF

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