Transcript 5817 | MetamORF

Transcript

ID CARD

MetamORF ID

5817

ENST00000265643

Name

GAL-201

Strand

Biotype

protein_coding

Start-end positions

68684475-68691175

CDS Start-stop positions

68684924-68690987

CDS Relative positions

Sequences

Transcript sequence

CCG ...

Genome browsers

UCSC

Gene

HGNC:4114

Aliases

ENSG00000069482,
GAL, GAL-GMAP, GALN,
GLNN, GMAP, HGNC:4114,
NCBI:51083, OFF:GAL

Chr 11

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3200736	72	GCG ...	APS ...	Ribo-seq	GCG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
636166	54	TTG ...	LSF ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293T, HeLa, THP-1
636164	81	CTG ...	LKT ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, THP-1
5819	81	ATG ...	MPL ...	Ribo-seq	ATG	weak	13	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HEK293T, HeLa, hES, HFF, RPE-1, THP-1
636156	30	CTG ...	LPL ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293T, HeLa, RPE-1, THP-1
5821	75	TTG ...	LAT ...	Ribo-seq	TTG	moderate	12	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, HFF, RPE-1, THP-1
5816	42	CTG ...	LDP ...	Ribo-seq	CTG		13	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, RPE-1, THP-1
3309004	372	ATG ...	MAR ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
636162	96	TTG ...	LTG ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293T, HeLa, THP-1
8843	114	CTG ...	LDP ...	Ribo-seq	CTG		10	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, RPE-1, THP-1
5823	45	ATG ...	MAS ...	Ribo-seq	ATG	strong	10	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, HFF, RPE-1, THP-1
636168	99	GTG ...	VPS ...	Ribo-seq	GTG	weak	7	sORFs_org_Human	Alternative Downstream Overlapping sORF	Blood, HeLa, THP-1
638673	54	CTG ...	LPL ...	Ribo-seq	CTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, RPE-1, THP-1

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