Transcript 8198 | MetamORF

Transcript

ID CARD

MetamORF ID

8198

ENST00000263847

Name

OSBP-201

Strand

Biotype

protein_coding

Start-end positions

59574398-59616144

CDS Start-stop positions

59576577-59615664

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

HGNC:8503

Aliases

ENSG00000110048,
HGNC:8503, NCBI:5007, OFF:OSBP,
OSBP, OSBP1

Chr 11

ORFs

67 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
285752	93	GTG ...	VVP ...	Ribo-seq	GTG	strong	6	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, LCL, MDA-MB-231
294046	165	ATG ...	MRK ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231
285732	30	CTG ...	LLW ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
1731694	174	ATG ...	MAG ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1725278	48	ATG ...	MKR ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
907480	123	GGC ...	GRN ...	Ribo-seq	GGC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
285740	45	ATG ...	MAQ ...	Ribo-seq	ATG	strong	9	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HAP1, HEK293, HeLa, HFF, LCL, MDA-MB-231, MM1S
2314913	111	CTG ...	LGA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
294034	72	ATG ...	MAH ...	Ribo-seq	ATG		8	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231
2314917	135	CTG ...	LAR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
294054	39	CTG ...	LVK ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, hES, LCL, MDA-MB-231
1725288	54	CTG ...	LQL ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, MDA-MB-231, RPE-1
3201143	51	CTT ...	LYR ...	Ribo-seq	CTT		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
1205480	87	CTG ...	LGV ...	Ribo-seq	CTG	strong	5	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293T, MDA-MB-231
907472	33	TGG ...	WGC ...	Ribo-seq	TGG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2314919	36	GTG ...	VGR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative sORF Upstream	MDA-MB-231
294060	165	ATG ...	MKE ...	Ribo-seq	ATG		8	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231
1505961	159	ATG ...	MKE ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, MDA-MB-231
294042	120	ATG ...	MGV ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
294040	114	GTG ...	VML ...	Ribo-seq	GTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
1731704	204	CTG ...	LLL ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1731708	126	GTG ...	VEP ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
285746	63	CTG ...	LSH ...	Ribo-seq	CTG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, LCL, MDA-MB-231, RPE-1
1821107	42	CTG ...	LLS ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
285726	60	ATG ...	MSP ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1731698	189	ATG ...	MLS ...	Ribo-seq	ATG		4	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, MDA-MB-231
285744	51	CTG ...	LTR ...	Ribo-seq	CTG	moderate	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, LCL, MDA-MB-231, RPE-1
907478	93	CAT ...	HQP ...	Ribo-seq	CAT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
907468	33	GGC ...	GKH ...	Ribo-seq	GGC	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
285734	33	GTG ...	VLL ...	Ribo-seq	GTG	weak	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, hES, LCL, MDA-MB-231, RPE-1, U2OS
294038	111	ATG ...	MLD ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
8197	63	CTG ...	LGD ...	Ribo-seq	CTG		8	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, LCL, MDA-MB-231, U2OS
285698	30	ATG ...	MPG ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Alternative Downstream Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF, LCL
2314915	123	CTG ...	LRR ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
285700	39	CTG ...	LEL ...	Ribo-seq	CTG	strong	3	sORFs_org_Human	Alternative Downstream Overlapping sORF	Blood, HeLa, LCL
1731696	186	CTG ...	LSP ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
285710	90	ATG ...	MDA ...	Ribo-seq	ATG	strong	6	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	BJ, Brain_tumor, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
1725261	102	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
907474	45	CAT ...	HHF ...	Ribo-seq	CAT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
285750	84	ATG ...	MNQ ...	Ribo-seq	ATG	weak	8	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1
285748	72	ATG ...	MKS ...	Ribo-seq	ATG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, LCL, MDA-MB-231, RPE-1
294044	129	TTG ...	LGK ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
294056	48	ATG ...	MWV ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, hES, LCL, MDA-MB-231
294050	30	ATG ...	MGT ...	Ribo-seq	ATG		9	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231, MM1S, RPE-1
907476	69	CCA ...	PTS ...	Ribo-seq	CCA	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
907470	30	TGG ...	WHS ...	Ribo-seq	TGG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
285708	78	ATG ...	MKQ ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human	InCDS Overlapping sORF	BJ, hES, LCL, MDA-MB-231, RPE-1, U2OS
634732	36	CTG ...	LQR ...	Ribo-seq	CTG	weak	7	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
285730	42	ATG ...	MEH ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
285706	69	ATG ...	MRR ...	Ribo-seq	ATG	weak	7	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, hES, LCL, MDA-MB-231, RPE-1, U2OS
1725274	54	CTG ...	LAA ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, MDA-MB-231
294058	54	CTG ...	LAM ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, hES, LCL, MDA-MB-231, RPE-1
294052	36	TTG ...	LEK ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231
2327617	165	GTG ...	VFP ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2314869	42	ATG ...	MFQ ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
285738	60	CTG ...	LLR ...	Ribo-seq	CTG	weak	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
285742	42	CTG ...	LSC ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, LCL, MDA-MB-231, RPE-1
294048	186	TTG ...	LLF ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
1731702	201	CTG ...	LLR ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
294036	93	ATG ...	MKQ ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
1731710	141	CTG ...	LAA ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231
285704	60	ATG ...	MIP ...	Ribo-seq	ATG	weak	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231
285702	36	TTG ...	LSG ...	Ribo-seq	TTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
1725291	105	CTG ...	LPW ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, RPE-1
285736	57	CTG ...	LRA ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
1731700	198	CTG ...	LRT ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1505949	60	ATG ...	MLG ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF

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