Transcript 111513

Transcript

ID CARD

MetamORF ID

111513

ENST00000261745

Name

NAA25-201

Strand

Biotype

protein_coding

Start-end positions

112026689-112109022

CDS Start-stop positions

112029531-112108773

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

HGNC:25783

Aliases

C12orf30,
ENSG00000111300, FLJ13089, HGNC:25783,
NAA25, NCBI:80018, OFF:NAA25

Chr 12

ORFs

35 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1740834	126	GTG ...	VRS ...	Ribo-seq	GTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1740827	147	TTG ...	LLT ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1740816	75	TTG ...	LNQ ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
111512	45	TTG ...	LKR ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231, RPE-1
2342772	93	ATG ...	MPE ...	Ribo-seq	ATG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, MDA-MB-231
306363	51	TTG ...	LMY ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
1740831	33	ATG ...	MST ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
306365	60	ATG ...	MRL ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
706603	87	AGA ...	RRI ...	Ribo-seq	AGA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
306371	87	CTG ...	LTI ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
1144014	123	TTG ...	LSS ...	Ribo-seq	TTG		3	sORFs_org_Human	Overlapping sORF Upstream	HEK293, MDA-MB-231
306369	69	TTG ...	LLS ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
706609	102	TTC ...	FES ...	Ribo-seq	TTC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1831506	30	CTG ...	LNI ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
2342747	171	ATG ...	MGY ...	Ribo-seq	ATG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
1740819	105	TTG ...	LFE ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
306359	66	ATG ...	MFF ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
2342751	207	CTG ...	LWS ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
1144016	129	CTG ...	LRL ...	Ribo-seq	CTG		3	sORFs_org_Human	Overlapping sORF Upstream	HEK293, MDA-MB-231
1740810	90	TTG ...	LRR ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
1144018	135	GTG ...	VVL ...	Ribo-seq	GTG		3	sORFs_org_Human	Overlapping sORF Upstream	HEK293, MDA-MB-231
306361	48	ATG ...	MYG ...	Ribo-seq	ATG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
306367	66	CTG ...	LSM ...	Ribo-seq	CTG		3	sORFs_org_Human	InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
1740829	186	TTG ...	LAI ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1740814	42	ATG ...	MLS ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
2342749	180	CTG ...	LPR ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231
1740825	144	TTG ...	LTS ...	Ribo-seq	TTG		3	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231
1740821	126	ATG ...	MLS ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
3232139	72	CTG ...	LPR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HeLa
706607	81	GTG ...	VHL ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, Jurkat, MDA-MB-231
706605	231	GTG ...	VDF ...	Ribo-seq	GTG		2	sORFs_org_Human	InCDS Overlapping sORF	Jurkat, MDA-MB-231
1740812	153	TTG ...	LIF ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
706611	99	ATG ...	MCR ...	Ribo-seq	ATG		4	sORFs_org_Human	InCDS Overlapping sORF	HEK293, Jurkat, MDA-MB-231
1144020	144	GTG ...	VRT ...	Ribo-seq	GTG		2	sORFs_org_Human	Overlapping sORF Upstream	HEK293
1740823	30	ATG ...	MDW ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa

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