Transcript 128 | MetamORF

Transcript

ID CARD

MetamORF ID

128

ENST00000260746

Name

ARL3-201

Strand

Biotype

protein_coding

Start-end positions

102673731-102714407

CDS Start-stop positions

102676894-102714275

CDS Relative positions

Sequences

Transcript sequence

ACC ...

Genome browsers

UCSC

Gene

HGNC:694

Aliases

ARFL3,
ARL3, ENSG00000138175, HGNC:694,
NCBI:403, OFF:ARL3

Chr 10

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
279537	84	ATG ...	MYG ...	Ribo-seq	ATG		14	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
898628	63	CCT ...	PGN ...	Ribo-seq	CCT		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
277952	39	GTG ...	VQT ...	Ribo-seq	GTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1
98532	78	GTG ...	VCQ ...	Ribo-seq	GTG	moderate	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
277956	66	TTG ...	LVD ...	Ribo-seq	TTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
900437	51	GAC ...	DHT ...	Ribo-seq	GAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
898612	33	TGT ...	CNR ...	Ribo-seq	TGT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
934693	36	CTG ...	LKT ...	Ribo-seq	CTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
934695	42	TTG ...	LHL ...	Ribo-seq	TTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
900439	87	CCT ...	PGN ...	Ribo-seq	CCT		3	sORFs_org_Human	Alternative Overlapping sORF Upstream	HeLa, Jurkat, THP-1
127	54	ATG ...	MGH ...	Ribo-seq	ATG	moderate	21	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
898610	42	TGC ...	CSQ ...	Ribo-seq	TGC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
279533	69	GTG ...	VDR ...	Ribo-seq	GTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
277959	78	ATG ...	MYG ...	Ribo-seq	ATG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
898622	36	TGG ...	WQD ...	Ribo-seq	TGG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
277954	63	GTG ...	VDR ...	Ribo-seq	GTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
405188	33	GCT ...	AWI ...	Ribo-seq	GCT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
98530	60	TTG ...	LLI ...	Ribo-seq	TTG	weak	17	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
2615916	108	GGC ...	GGA ...	Ribo-seq	GGC		2	sORFs_org_Human	Alternative Overlapping sORF Upstream	HeLa, THP-1
898618	30	CAT ...	HQK ...	Ribo-seq	CAT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
405773	57	TCT ...	SGR ...	Ribo-seq	TCT		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
2679752	129	GTG ...	VRA ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	RPE-1
898608	93	CGA ...	RPS ...	Ribo-seq	CGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
405186	63	ACT ...	TEC ...	Ribo-seq	ACT	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
898614	36	GGA ...	GRI ...	Ribo-seq	GGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3303898	549	ATG ...	MGL ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
279531	42	GTG ...	VQT ...	Ribo-seq	GTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1
935133	75	CTG ...	LKT ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
898624	39	AGA ...	RPG ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
898605	42	TCC ...	SSL ...	Ribo-seq	TCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
405179	39	AGA ...	RKT ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
405184	45	GAC ...	DHT ...	Ribo-seq	GAC		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
898630	210	CCG ...	PQQ ...	Ribo-seq	CCG		1	sORFs_org_Human	Overlapping sORF Upstream	Jurkat
898626	69	CTC ...	LNF ...	Ribo-seq	CTC	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, Jurkat, THP-1
898632	108	GCT ...	AVR ...	Ribo-seq	GCT		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
405177	51	TCT ...	SGR ...	Ribo-seq	TCT		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
898603	57	CAC ...	HRR ...	Ribo-seq	CAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
98528	30	ATG ...	MSM ...	Ribo-seq	ATG	moderate	10	sORFs_org_Human Johnstone2016	Alternative Downstream Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, hES, HFF, RPE-1
898620	138	AGA ...	RHQ ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
279535	72	TTG ...	LVD ...	Ribo-seq	TTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
900433	42	GGA ...	GRI ...	Ribo-seq	GGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
900430	48	TCC ...	SSL ...	Ribo-seq	TCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
935135	81	TTG ...	LHL ...	Ribo-seq	TTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1

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