Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

1556

ID

ENST00000260731

Name

KIF11-201

Strand

+

Biotype

protein_coding

Start-end positions

92593286-92655395

CDS Start-stop positions

92593376-92653796

CDS Relative positions

-

Sequences

Transcript sequence

AGA ...

Gene

ID

HGNC:6388

Aliases

Eg5,
ENSG00000138160, HGNC:6388, HKSP,
KIF11, KNSL1, NCBI:3832,
OFF:KIF11, TRIP5


Chr 10

ORFs

136 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

281420 153

TTG ...

LRN ...

Ribo-seq
TTG 6 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
hES, LCL, MDA-MB-231
95872 36

ATG ...

MRN ...

Ribo-seq
ATG weak 7 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
hES, MDA-MB-231, RPE-1
1093805 54

ATG ...

MFL ...

Ribo-seq
ATG 8 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231, RPE-1
276632 96

ATG ...

MAF ...

Ribo-seq
ATG moderate 8 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Brain_tumor, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231
276642 54

ATG ...

MAT ...

Ribo-seq
ATG moderate 9 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Brain_tumor, HEK293,
HeLa, hES, HFF,
LCL, MDA-MB-231
897426 102

GTC ...

VFQ ...

Ribo-seq
GTC moderate 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
897397 117

TTT ...

FQS ...

Ribo-seq
TTT 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
95862 48

TTG ...

LTN ...

Ribo-seq
TTG weak 10 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, Flp-In_T-REx-293,
HEK293, HEK293T, LCL,
MDA-MB-231, RPE-1
276644 90

GTG ...

VRL ...

Ribo-seq
GTG moderate 14 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, guo_2014,
HEK293, HeLa, hES,
LCL, MDA-MB-231, RPE-1
1816766 33

ATG ...

MLL ...

Ribo-seq
ATG weak 2 sORFs_org_Human
Johnstone2016
    Alternative
    Downstream
    sORF
Brain_tumor, HEK293, HeLa,
HFF
281444 192

TTG ...

LLK ...

Ribo-seq
TTG 10 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
hES, HFF, LCL,
MDA-MB-231, RPE-1
281442 261

CTG ...

LTC ...

Ribo-seq
CTG 9 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
hES, LCL, MDA-MB-231,
RPE-1
524206 54

CTG ...

LED ...

Ribo-seq
CTG 6 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, hES,
MDA-MB-231, U2OS
1816760 39

CTG ...

LKP ...

Ribo-seq
CTG moderate 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
480670 30

ATG ...

MAA ...

Ribo-seq
ATG strong 5 sORFs_org_Human
Johnstone2016
    InCDS
    Overlapping
    sORF
BJ, Brain_tumor, HEK293,
HEK293T, HeLa, HFF,
MDA-MB-231
276623 39

TTG ...

LQQ ...

Ribo-seq
TTG 6 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, LCL,
MDA-MB-231, THP-1
897436 69

ATC ...

IYM ...

Ribo-seq
ATC moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
276615 69

TTG ...

LQE ...

Ribo-seq
TTG moderate 4 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, LCL, MDA-MB-231
95844 78

ATG ...

MFT ...

Ribo-seq
ATG 8 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HEK293T, HeLa, MDA-MB-231,
RPE-1
281450 135

ATG ...

MLP ...

Ribo-seq
ATG 10 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HEK293T, HFF, LCL,
MDA-MB-231, RPE-1
1718826 36

CTG ...

LLI ...

Ribo-seq
CTG moderate 3 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, MDA-MB-231
1566 42

ATG ...

MKS ...

Ribo-seq
ATG 6 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, hES,
MDA-MB-231
897401 42

CTG ...

LRD ...

Ribo-seq
CTG 9 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, Jurkat, MDA-MB-231,
RPE-1
97931 66

ATG ...

MAS ...

Ribo-seq
ATG moderate 9 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Brain_tumor, HEK293,
HeLa, HFF, LCL,
MDA-MB-231
276593 48

CTG ...

LRR ...

Ribo-seq
CTG weak 13 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, guo_2014, HEK293,
HFF, LCL, loayza_puch_2016,
MDA-MB-231, MM1S, RPE-1,
U2OS
2300393 189

TTG ...

LTS ...

Ribo-seq
TTG 2 sORFs_org_Human
    InCDS
    Overlapping
    sORF
hES, MDA-MB-231
281428 90

ATG ...

MKS ...

Ribo-seq
ATG 6 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, hES,
LCL, MDA-MB-231
276595 87

GTG ...

VIL ...

Ribo-seq
GTG 9 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HCT116,
HEK293, HeLa, hES,
LCL, MDA-MB-231
1202493 42

CTG ...

LTR ...

Ribo-seq
CTG 6 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
hES, MDA-MB-231
897446 48

ACC ...

TTE ...

Ribo-seq
ACC moderate 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
897430 30

TGT ...

CVY ...

Ribo-seq
TGT strong 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
897403 30

AGA ...

RCL ...

Ribo-seq
AGA 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
95852 75

TTG ...

LIL ...

Ribo-seq
TTG weak 5 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, LCL, MDA-MB-231
1570 42

ATG ...

MKG ...

Ribo-seq
ATG 8 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Brain_tumor, HAP1,
HEK293, HeLa, hES,
HFF, MDA-MB-231, RPE-1
897450 33

TTA ...

LFI ...

Ribo-seq
TTA moderate 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
95854 33

TTG ...

LKK ...

Ribo-seq
TTG weak 7 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, HEK293, HeLa,
LCL, MDA-MB-231, RPE-1
901872 57

CAC ...

HYL ...

Ribo-seq
CAC 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
95870 54

ATG ...

MDV ...

Ribo-seq
ATG moderate 16 sORFs_org_Human
Johnstone2016
    InCDS
    Overlapping
    sORF
BJ, Blood, Brain_tumor,
guo_2014, HEK293, HeLa,
hES, HFF, LCL,
MDA-MB-231, RPE-1, U2OS
1718818 72

TTG ...

LIF ...

Ribo-seq
TTG 4 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HeLa, hES,
MDA-MB-231
897428 96

CAG ...

QCL ...

Ribo-seq
CAG weak 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
897391 96

CAT ...

HLL ...

Ribo-seq
CAT 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
480663 51

CTG ...

LMF ...

Ribo-seq
CTG 8 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, HEK293T,
HeLa, hES, MDA-MB-231
901874 138

ATA ...

IMV ...

Ribo-seq
ATA 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
901880 48

CTG ...

LRD ...

Ribo-seq
CTG 10 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, hES, Jurkat,
MDA-MB-231, RPE-1
276606 123

CTG ...

LNF ...

Ribo-seq
CTG 6 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
hES, LCL, MDA-MB-231
276591 93

TTG ...

LIF ...

Ribo-seq
TTG moderate 19 sORFs_org_Human
    Alternative
    Overlapping
    sORF
    Upstream
BJ, Blood, guo_2014,
HAP1, HEK293, hES,
HFF, LCL, loayza_puch_2016,
MDA-MB-231, MM1S, RPE-1,
THP-1, U2OS
1560 87

CTG ...

LAL ...

Ribo-seq
CTG 6 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, hES,
MDA-MB-231
95858 90

ATG ...

MYL ...

Ribo-seq
ATG moderate 12 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HEK293T, HFF, LCL,
MDA-MB-231, RPE-1
281426 129

CTG ...

LNF ...

Ribo-seq
CTG 6 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
hES, LCL, MDA-MB-231
1718828 33

TTG ...

LIR ...

Ribo-seq
TTG weak 2 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, MDA-MB-231
631104 33

CTG ...

LNH ...

Ribo-seq
CTG moderate 9 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, HEK293, HeLa,
hES, MDA-MB-231, THP-1
897424 39

ACA ...

TMQ ...

Ribo-seq
ACA moderate 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
1721808 48

GTG ...

VRK ...

Ribo-seq
GTG 5 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, hES,
MDA-MB-231
281430 78

TTG ...

LIF ...

Ribo-seq
TTG 5 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293, hES, LCL,
MDA-MB-231
897389 105

TGT ...

CLE ...

Ribo-seq
TGT 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
901884 87

GGA ...

GTG ...

Ribo-seq
GGA 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
281422 141

CTG ...

LIM ...

Ribo-seq
CTG 6 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
hES, LCL, MDA-MB-231
3109730 147

TTG ...

LKP ...

Ribo-seq
TTG 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
hES
524211 30

TTG ...

LSH ...

Ribo-seq
TTG weak 9 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
guo_2014, HAP1, HEK293,
HeLa, hES, MDA-MB-231,
U2OS
1129950 207

CTG ...

LVW ...

Ribo-seq
CTG 3 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
HEK293, hES, MDA-MB-231
897420 75

ATT ...

IPN ...

Ribo-seq
ATT weak 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
281446 153

CTG ...

LRR ...

Ribo-seq
CTG 8 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HFF, LCL, MDA-MB-231,
RPE-1
1129946 66

GTG ...

VKI ...

Ribo-seq
GTG 4 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, MDA-MB-231
276621 42

CTG ...

LEL ...

Ribo-seq
CTG strong 3 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, LCL, MDA-MB-231
95848 63

TTG ...

LFV ...

Ribo-seq
TTG 8 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HEK293T,
HeLa, MDA-MB-231
901888 81

GGA ...

GSE ...

Ribo-seq
GGA 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
1135640 234

TTG ...

LKP ...

Ribo-seq
TTG 7 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
hES, MDA-MB-231, RPE-1
897405 90

TGG ...

WKY ...

Ribo-seq
TGG moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
276600 147

TTG ...

LRN ...

Ribo-seq
TTG 5 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, hES,
LCL, MDA-MB-231
901876 123

TTT ...

FQS ...

Ribo-seq
TTT 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
2300391 195

ATG ...

MNL ...

Ribo-seq
ATG 2 sORFs_org_Human
    InCDS
    Overlapping
    sORF
hES, MDA-MB-231
1129948 210

ATG ...

MLV ...

Ribo-seq
ATG 4 sORFs_org_Human
Johnstone2016
    Alternative
    Downstream
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
hES, HFF, MDA-MB-231
897434 84

GTA ...

VYC ...

Ribo-seq
GTA weak 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
1562 81

CTG ...

LEK ...

Ribo-seq
CTG 6 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
hES, MDA-MB-231
97933 39

ATG ...

MKG ...

Ribo-seq
ATG 7 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
hES, MDA-MB-231, RPE-1
95868 66

CTG ...

LRN ...

Ribo-seq
CTG weak 14 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, guo_2014,
HEK293, HeLa, hES,
LCL, MDA-MB-231, RPE-1
897395 132

ATA ...

IMV ...

Ribo-seq
ATA 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
276602 135

CTG ...

LIM ...

Ribo-seq
CTG 6 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
hES, LCL, MDA-MB-231
901878 102

TGG ...

WRS ...

Ribo-seq
TGG 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
1816762 33

CTG ...

LCL ...

Ribo-seq
CTG moderate 1 sORFs_org_Human
    Downstream
    sORF
HeLa
281438 282

ATG ...

MNL ...

Ribo-seq
ATG 10 sORFs_org_Human
Johnstone2016
    InCDS
    Overlapping
    sORF
Blood, Brain_tumor, HAP1,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231,
RPE-1
1564 57

GTG ...

VKG ...

Ribo-seq
GTG 6 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, hES,
MDA-MB-231
276604 129

ATG ...

MVL ...

Ribo-seq
ATG 6 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
hES, LCL, MDA-MB-231
526027 39

GTG ...

VSR ...

Ribo-seq
GTG 4 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, MDA-MB-231,
U2OS
276619 51

TTG ...

LAV ...

Ribo-seq
TTG strong 4 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, LCL,
MDA-MB-231
276630 63

TTG ...

LDL ...

Ribo-seq
TTG moderate 5 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, LCL,
MDA-MB-231, RPE-1
1558 96

ATG ...

MAK ...

Ribo-seq
ATG 7 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
hES, MDA-MB-231
95856 108

TTG ...

LKK ...

Ribo-seq
TTG weak 12 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HEK293T, HFF, LCL,
MDA-MB-231, RPE-1
95864 57

TTG ...

LQV ...

Ribo-seq
TTG moderate 12 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, hES, LCL,
MDA-MB-231, RPE-1, THP-1
897399 96

TGG ...

WRS ...

Ribo-seq
TGG 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
897409 51

CAT ...

HYC ...

Ribo-seq
CAT moderate 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
281434 51

ATG ...

MHT ...

Ribo-seq
ATG 3 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain_tumor, HEK293, HeLa,
HFF, LCL, MDA-MB-231
901882 36

AGA ...

RCL ...

Ribo-seq
AGA 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
97927 75

CTG ...

LIL ...

Ribo-seq
CTG moderate 8 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
HFF, LCL, MDA-MB-231
897417 93

AAG ...

KMY ...

Ribo-seq
AAG weak 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
276610 36

TTG ...

LME ...

Ribo-seq
TTG weak 6 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, LCL, MDA-MB-231
1128983 63

ATG ...

MNY ...

Ribo-seq
ATG weak 6 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, hES,
MDA-MB-231
95846 66

GTG ...

VLF ...

Ribo-seq
GTG 8 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HEK293T,
HeLa, MDA-MB-231, RPE-1
281436 45

TTG ...

LQQ ...

Ribo-seq
TTG 6 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
LCL, MDA-MB-231, THP-1
1128989 150

ATG ...

MEK ...

Ribo-seq
ATG moderate 2 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
HEK293
897415 102

AAA ...

KLQ ...

Ribo-seq
AAA moderate 2 sORFs_org_Human
    InCDS
    Overlapping
    sORF
HEK293, Jurkat
1816764 42

GTG ...

VPF ...

Ribo-seq
GTG weak 1 sORFs_org_Human
    Alternative
    Downstream
    sORF
HeLa
1129952 204

GTG ...

VWI ...

Ribo-seq
GTG 3 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
HEK293, hES, MDA-MB-231
1568 132

CTG ...

LPA ...

Ribo-seq
CTG 11 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HEK293T, HFF, LCL,
MDA-MB-231, RPE-1
276608 84

ATG ...

MKS ...

Ribo-seq
ATG 6 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, LCL, MDA-MB-231
95840 102

TTG ...

LEH ...

Ribo-seq
TTG 8 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HeLa, LCL, MDA-MB-231,
RPE-1
276597 81

CTG ...

LYE ...

Ribo-seq
CTG 8 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HCT116, HEK293,
HeLa, hES, LCL,
MDA-MB-231
1092871 48

ATG ...

MFL ...

Ribo-seq
ATG 8 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231, RPE-1
524204 63

GTG ...

VYE ...

Ribo-seq
GTG 6 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, hES,
MDA-MB-231, U2OS
2308550 186

TTG ...

LAG ...

Ribo-seq
TTG 1 sORFs_org_Human
    Alternative
    Downstream
    Overlapping
    sORF
MDA-MB-231
897444 69

TCA ...

SLR ...

Ribo-seq
TCA moderate 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Jurkat
1718837 36

ATG ...

MCL ...

Ribo-seq
ATG moderate 5 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Brain_tumor, HEK293,
HeLa, HFF, MDA-MB-231,
RPE-1
281440 276

TTG ...

LTS ...

Ribo-seq
TTG 9 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
hES, LCL, MDA-MB-231,
RPE-1
95842 81

TTG ...

LMF ...

Ribo-seq
TTG 8 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HEK293T, HeLa, MDA-MB-231,
RPE-1
281432 57

CTG ...

LMF ...

Ribo-seq
CTG 12 sORFs_org_Human
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HEK293T, HeLa, hES,
LCL, MDA-MB-231, RPE-1
276612 33

ATG ...

MEK ...

Ribo-seq
ATG moderate 6 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Brain_tumor, HEK293,
HeLa, HFF, LCL,
MDA-MB-231
2300395 174

CTG ...

LTC ...

Ribo-seq
CTG 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
MDA-MB-231
897413 30

AAC ...

NNF ...

Ribo-seq
AAC weak 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
1721806 57

CTG ...

LQP ...

Ribo-seq
CTG 6 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231
95850 45

ATG ...

MKL ...

Ribo-seq
ATG 7 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HEK293T,
HeLa, MDA-MB-231
1129944 84

GTG ...

VLW ...

Ribo-seq
GTG 7 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, hES,
MDA-MB-231, RPE-1
97929 69

CTG ...

LMA ...

Ribo-seq
CTG moderate 8 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
HFF, LCL, MDA-MB-231
897407 63

TTT ...

FGK ...

Ribo-seq
TTT strong 1 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Jurkat
95866 39

TTG ...

LDR ...

Ribo-seq
TTG moderate 11 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
BJ, Blood, HEK293,
HeLa, hES, LCL,
MDA-MB-231, RPE-1, THP-1
281424 135

ATG ...

MVL ...

Ribo-seq
ATG 7 sORFs_org_Human
Johnstone2016
    InCDS
    Overlapping
    sORF
Blood, Brain_tumor, HAP1,
HEK293, HeLa, hES,
HFF, LCL, MDA-MB-231
1128981 36

ATG ...

MQK ...

Ribo-seq
ATG moderate 4 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, MDA-MB-231
97925 78

GTG ...

VLI ...

Ribo-seq
GTG weak 8 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
HFF, LCL, MDA-MB-231
1721810 39

ATG ...

MEC ...

Ribo-seq
ATG 4 sORFs_org_Human
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Brain_tumor, HEK293,
HeLa, HFF
1555 60

TTG ...

LHY ...

Ribo-seq
TTG 14 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, HAP1,
HEK293, HeLa, hES,
MDA-MB-231, RPE-1, THP-1,
U2OS
281448 138

ATG ...

MML ...

Ribo-seq
ATG 9 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HEK293, HEK293T,
HFF, LCL, MDA-MB-231,
RPE-1
1721804 60

TTG ...

LLQ ...

Ribo-seq
TTG 6 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, HEK293, HeLa,
hES, MDA-MB-231
3109732 105

TTG ...

LLK ...

Ribo-seq
TTG 1 sORFs_org_Human
    InCDS
    Overlapping
    sORF
hES
1572 96

TTG ...

LLS ...

Ribo-seq
TTG 16 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
Blood, Flp-In_T-REx-293, guo_2014,
HAP1, HEK293, HeLa,
hES, LCL, MDA-MB-231,
RPE-1, THP-1
276640 66

CTG ...

LIN ...

Ribo-seq
CTG moderate 7 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, HeLa, hES,
LCL, MDA-MB-231
95860 84

CTG ...

LVS ...

Ribo-seq
CTG moderate 13 sORFs_org_Human
    InCDS
    Overlapping
    sORF
Blood, HAP1, HEK293,
HEK293T, HFF, Jurkat,
LCL, MDA-MB-231, RPE-1
276617 60

GTG ...

VKT ...

Ribo-seq
GTG moderate 4 sORFs_org_Human
    Alternative
    InCDS
    Overlapping
    sORF
HEK293, LCL, MDA-MB-231

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

B_cell

BJ

Blood

Brain

Brain_tumor

Breast

Flp-In_T-REx-293

guo_2014

HAP1

HCT116

HEK293

HEK293T

HeLa

hES

HFF

Jurkat

LCL

loayza_puch_2016

MDA-MB-231

MM1S

Monocyte

NCCIT

RPE-1

Skeletal_muscle

THP-1

U2OS