Transcript 284265

Transcript

ID CARD

MetamORF ID

284265

ENST00000241052

Name

CAT-201

Strand

Biotype

protein_coding

Start-end positions

34438925-34472062

CDS Start-stop positions

34439014-34471433

CDS Relative positions

Sequences

Transcript sequence

ACT ...

Genome browsers

UCSC

Gene

HGNC:1516

Aliases

CAT,
ENSG00000121691, HGNC:1516, NCBI:847,
OFF:CAT

Chr 11

ORFs

51 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
293276	210	ATG ...	MDH ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231, THP-1
1731125	171	CTG ...	LRS ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Blood
638030	147	GTG ...	VLQ ...	Ribo-seq	GTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, THP-1
284275	108	ATG ...	MRR ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	InCDS Overlapping sORF	Blood, LCL, MDA-MB-231
1724238	75	ATG ...	MAS ...	Ribo-seq	ATG	strong	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
915948	69	GCA ...	AYW ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
634180	39	CTG ...	LQC ...	Ribo-seq	CTG	weak	9	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
3306232	1584	ATG ...	MAD ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
284267	36	GTG ...	VIG ...	Ribo-seq	GTG	weak	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, Jurkat, LCL, MDA-MB-231, RPE-1, THP-1
905855	51	GCA ...	AYW ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
634188	54	CTG ...	LEN ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231, THP-1
905865	69	AAA ...	KEK ...	Ribo-seq	AAA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
638017	93	TTG ...	LEI ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, THP-1
634184	132	TTG ...	LRS ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, THP-1
634186	120	ATG ...	MTL ...	Ribo-seq	ATG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	THP-1
1731127	159	CTG ...	LTT ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Blood
284264	66	ATG ...	MVT ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, LCL, MDA-MB-231, THP-1
638035	96	CTG ...	LPW ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
905859	39	TCG ...	SWV ...	Ribo-seq	TCG	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1724240	48	TTG ...	LPQ ...	Ribo-seq	TTG	weak	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
293272	69	CTG ...	LSL ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, Jurkat, LCL, MDA-MB-231, RPE-1, THP-1
284271	117	CTG ...	LLK ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, LCL, MDA-MB-231, THP-1
905863	90	TCC ...	SIF ...	Ribo-seq	TCC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1724236	81	CTG ...	LTM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	InCDS Overlapping sORF	Blood, MDA-MB-231
284269	141	CTG ...	LTR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	InCDS Overlapping sORF	Blood, LCL, MDA-MB-231, THP-1
293284	69	CTG ...	LEK ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
905867	45	GAA ...	EGS ...	Ribo-seq	GAA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
284273	114	TTG ...	LKM ...	Ribo-seq	TTG	weak	4	sORFs_org_Human	InCDS Overlapping sORF	Blood, LCL, MDA-MB-231, THP-1
915957	141	CAA ...	QIT ...	Ribo-seq	CAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
634182	141	TTG ...	LAT ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, THP-1
634199	33	CTG ...	LDF ...	Ribo-seq	CTG	moderate	3	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, MDA-MB-231, THP-1
638028	150	GTG ...	VVL ...	Ribo-seq	GTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, THP-1
293289	213	ATG ...	MHK ...	Ribo-seq	ATG		5	sORFs_org_Human Johnstone2016	Alternative Downstream Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231, THP-1
915950	87	ACT ...	TSG ...	Ribo-seq	ACT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
284286	48	ATG ...	MRN ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
293280	177	ATG ...	MGR ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL, MDA-MB-231, THP-1
905869	36	GGA ...	GHG ...	Ribo-seq	GGA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
638024	105	CTG ...	LAL ...	Ribo-seq	CTG		2	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231, THP-1
638026	99	TTG ...	LRP ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	MDA-MB-231, THP-1
293286	45	CTG ...	LPM ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
634193	48	TTG ...	LEI ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, MDA-MB-231, THP-1
293282	117	GTG ...	VLR ...	Ribo-seq	GTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
905872	63	GGG ...	GDS ...	Ribo-seq	GGG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
915955	57	ATC ...	IRF ...	Ribo-seq	ATC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
905861	63	GTA ...	VTG ...	Ribo-seq	GTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
293278	183	ATG ...	MQM ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, LCL, MDA-MB-231, THP-1
293274	216	ATG ...	MDM ...	Ribo-seq	ATG		7	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HAP1, HEK293, HeLa, HFF, LCL, MDA-MB-231, THP-1
638032	120	TTG ...	LVL ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1
634190	36	CTG ...	LTQ ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, MDA-MB-231, THP-1
293270	111	ATG ...	MVT ...	Ribo-seq	ATG		5	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Blood, Brain_tumor, HEK293, HeLa, HFF, LCL, MDA-MB-231, THP-1
905857	45	GGA ...	GPS ...	Ribo-seq	GGA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat

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