Transcript 1029 | MetamORF

Transcript

ID CARD

MetamORF ID

1029

ENST00000224237

Name

VIM-201

Strand

Biotype

protein_coding

Start-end positions

17229278-17237593

CDS Start-stop positions

17229423-17237271

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

HGNC:12692

Aliases

ENSG00000026025,
HGNC:12692, NCBI:7431, OFF:VIM,
VIM

Chr 10

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
900936	129	AGC ...	SPR ...	Ribo-seq	AGC		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, Jurkat, THP-1
2615931	204	GTC ...	VAP ...	Ribo-seq	GTC		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, THP-1
1044	234	TTG ...	LLT ...	Ribo-seq	TTG		32	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
94644	150	ATG ...	MPR ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1301479	213	CCA ...	PTG ...	Ribo-seq	CCA		3	sORFs_org_Human	InCDS Overlapping sORF	BJ, HeLa, THP-1
3298402	1401	ATG ...	MST ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
99647	87	TTG ...	LTL ...	Ribo-seq	TTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
1054	168	CTG ...	LST ...	Ribo-seq	CTG		29	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
900938	120	CGA ...	RGG ...	Ribo-seq	CGA		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, Jurkat, THP-1
2615944	288	AAA ...	KVW ...	Ribo-seq	AAA		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, THP-1
1046	231	CTG ...	LTS ...	Ribo-seq	CTG		32	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
99651	75	TTG ...	LPP ...	Ribo-seq	TTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, hES, HFF, MDA-MB-231, Monocyte, RPE-1, THP-1
900932	210	AGG ...	RQV ...	Ribo-seq	AGG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, Jurkat, THP-1
1301472	171	GCG ...	AGA ...	Ribo-seq	GCG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ
99645	102	ATG ...	MLR ...	Ribo-seq	ATG		18	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
1048	222	CTG ...	LRL ...	Ribo-seq	CTG		31	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
900950	183	CAA ...	QSR ...	Ribo-seq	CAA		4	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, Jurkat, THP-1
900948	198	ACG ...	TPC ...	Ribo-seq	ACG		3	sORFs_org_Human	InCDS Overlapping sORF	BJ, HEK293, Jurkat
1050	216	CTG ...	LPT ...	Ribo-seq	CTG		31	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
99649	81	TTG ...	LRL ...	Ribo-seq	TTG		14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, hES, HFF, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
900952	150	TGC ...	CSP ...	Ribo-seq	TGC		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, Jurkat
1042	279	CTG ...	LPR ...	Ribo-seq	CTG		32	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
900930	234	CGA ...	RAR ...	Ribo-seq	CGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3199738	300	GTC ...	VSN ...	Ribo-seq	GTC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
99643	123	GTG ...	VNT ...	Ribo-seq	GTG		19	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, THP-1, U2OS
900954	132	GTC ...	VTF ...	Ribo-seq	GTC		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, Jurkat, THP-1
1301484	114	AAG ...	KTC ...	Ribo-seq	AAG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293
900942	129	AGA ...	RCF ...	Ribo-seq	AGA		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, Jurkat, THP-1
900956	126	TTC ...	FVN ...	Ribo-seq	TTC		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, Jurkat, THP-1
1052	201	ATG ...	MTP ...	Ribo-seq	ATG		31	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
1038	291	ATG ...	MKV ...	Ribo-seq	ATG		32	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
900944	81	AGG ...	RML ...	Ribo-seq	AGG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, Jurkat, THP-1
900940	96	CGA ...	RGH ...	Ribo-seq	CGA		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, Jurkat, THP-1
900958	99	TTA ...	LRW ...	Ribo-seq	TTA		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, Jurkat, THP-1
1040	285	GTG ...	VWL ...	Ribo-seq	GTG		32	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
94683	78	ATG ...	MLT ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
900934	195	GGG ...	GGP ...	Ribo-seq	GGG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, Jurkat, THP-1
1028	201	CTG ...	LQA ...	Ribo-seq	CTG		6	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HEK293T, LCL, Monocyte
94655	162	ATG ...	MTA ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1056	135	GTG ...	VKW ...	Ribo-seq	GTG		30	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1, U2OS
900960	93	TGG ...	WPL ...	Ribo-seq	TGG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, Jurkat, THP-1

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