Transcript 1661 | MetamORF

Transcript

ID CARD

MetamORF ID

1661

ENST00000016171

Name

COX15-201

Strand

Biotype

protein_coding

Start-end positions

99713515-99732100

CDS Start-stop positions

99714587-99732049

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

HGNC:2263

Aliases

CEMCOX2,
COX15, ENSG00000014919, HGNC:2263,
NCBI:1355, OFF:COX15

Chr 10

ORFs

54 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
277290	39	GTG ...	VFL ...	Ribo-seq	GTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231
96119	42	CTG ...	LPT ...	Ribo-seq	CTG	weak	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
277305	48	TTG ...	LHQ ...	Ribo-seq	TTG	weak	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
277295	60	TTG ...	LCT ...	Ribo-seq	TTG	moderate	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
902044	69	TGT ...	CGP ...	Ribo-seq	TGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
98224	45	ATG ...	MGS ...	Ribo-seq	ATG	strong	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, hES, RPE-1, THP-1
277274	45	TTG ...	LRI ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, RPE-1
98220	33	ATG ...	MNS ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	Alternative Downstream Overlapping sORF	HEK293, HeLa
898069	81	AAT ...	NKG ...	Ribo-seq	AAT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
277285	51	GTG ...	VPA ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231
277276	51	ATG ...	MFL ...	Ribo-seq	ATG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
1719205	111	CTG ...	LEG ...	Ribo-seq	CTG	strong	4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
96115	54	CTG ...	LDP ...	Ribo-seq	CTG	strong	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, RPE-1, THP-1, U2OS
898060	60	GTT ...	VET ...	Ribo-seq	GTT		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1816948	45	ATG ...	MIL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	HeLa
277303	75	CTG ...	LSG ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231
898071	123	GGA ...	GGS ...	Ribo-seq	GGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
277300	48	CTG ...	LQW ...	Ribo-seq	CTG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
1660	78	GTG ...	VPA ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa, LCL, MDA-MB-231
902048	75	GGA ...	GGS ...	Ribo-seq	GGA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
902046	51	CTC ...	LLG ...	Ribo-seq	CTC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2301391	87	TTG ...	LLP ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
98226	90	TTG ...	LAF ...	Ribo-seq	TTG	strong	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
277283	84	ATG ...	MLG ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, THP-1
1204176	144	ATG ...	MTS ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa, MDA-MB-231
1202671	39	GTG ...	VEQ ...	Ribo-seq	GTG	strong	4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, MDA-MB-231
898062	72	CCA ...	PTP ...	Ribo-seq	CCA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
898058	39	AAC ...	NSR ...	Ribo-seq	AAC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
96121	60	ATG ...	MAP ...	Ribo-seq	ATG	moderate	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
277279	75	TTG ...	LFI ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, THP-1
281758	66	TTG ...	LLM ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, RPE-1
898064	42	TGT ...	CGP ...	Ribo-seq	TGT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
281765	60	GTG ...	VFL ...	Ribo-seq	GTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231, RPE-1
277288	33	TTG ...	LPS ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, Jurkat, LCL, MDA-MB-231, RPE-1
1719203	78	CTG ...	LLS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, MDA-MB-231
281754	129	TTG ...	LRI ...	Ribo-seq	TTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
631378	102	GTG ...	VEE ...	Ribo-seq	GTG	strong	13	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1
277264	72	ATG ...	MSQ ...	Ribo-seq	ATG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231, U2OS
277293	45	CTG ...	LLP ...	Ribo-seq	CTG	weak	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
281756	135	ATG ...	MFL ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, LCL, MDA-MB-231
631376	93	GTG ...	VAV ...	Ribo-seq	GTG	strong	13	sORFs_org_Human	Alternative Overlapping sORF Upstream	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, THP-1
277307	39	CTG ...	LSS ...	Ribo-seq	CTG	weak	17	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
898054	39	ATC ...	IPP ...	Ribo-seq	ATC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2542603	60	ATG ...	MEQ ...	Ribo-seq	ATG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa
2301393	117	ATG ...	MTS ...	Ribo-seq	ATG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
898067	33	AGT ...	STH ...	Ribo-seq	AGT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
277309	66	CTG ...	LGC ...	Ribo-seq	CTG	strong	17	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2301389	84	CTG ...	LPT ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, MDA-MB-231
1204172	111	CTG ...	LPT ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa, MDA-MB-231
277281	81	CTG ...	LGL ...	Ribo-seq	CTG	strong	5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, THP-1
96117	48	ATG ...	MVY ...	Ribo-seq	ATG	strong	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
1816946	30	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
281763	54	TTG ...	LPS ...	Ribo-seq	TTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, LCL, MDA-MB-231, RPE-1
1204174	114	TTG ...	LLP ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HeLa, MDA-MB-231

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