Transcript 2919 | MetamORF

Transcript

ID CARD

MetamORF ID

2919

ENST00000525054

Name

EIF3M-204

Strand

Biotype

retained_intron

Start-end positions

32593769-32602302

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TAT ...

Genome browsers

UCSC

Gene

HGNC:24460

Aliases

eIF3m,
EIF3M, ENSG00000149100, FLJ29030,
GA17, hfl-B5, HGNC:24460,
NCBI:10480, OFF:EIF3M, PCID1,
TANGO7

Chr 11

ORFs

37 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
905585	30	CAT ...	HFF ...	Ribo-seq	CAT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
407095	63	GAA ...	ELL ...	Ribo-seq	GAA		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
2921	126	ATG ...	MLL ...	Ribo-seq	ATG		18	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MM1S, RPE-1
1297104	33	ATG ...	MHF ...	Ribo-seq	ATG	weak	6	sORFs_org_Human	Intronic sORF	Blood, HEK293, HEK293T, hES, MDA-MB-231, RPE-1
2927	60	TTG ...	LLG ...	Ribo-seq	TTG		34	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
905601	45	CAC ...	HTS ...	Ribo-seq	CAC		1	sORFs_org_Human	Intronic sORF	Jurkat
905590	111	AAT ...	NWH ...	Ribo-seq	AAT		1	sORFs_org_Human	Intronic sORF	Jurkat
101470	117	GTG ...	VLN ...	Ribo-seq	GTG		6	sORFs_org_Human	Intronic sORF	HAP1, HEK293, HEK293T, HeLa, hES
905597	33	CAC ...	HNA ...	Ribo-seq	CAC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
1439613	69	TTG ...	LEG ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	HeLa
1204969	45	TTG ...	LSL ...	Ribo-seq	TTG		3	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, HAP1, MM1S
407099	132	GCA ...	ALK ...	Ribo-seq	GCA		3	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
407097	54	GGA ...	GSY ...	Ribo-seq	GGA		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
407101	180	ACC ...	TIF ...	Ribo-seq	ACC		2	sORFs_org_Human	Intronic sORF	HCT116, Jurkat
1297107	99	ATG ...	MSS ...	Ribo-seq	ATG		1	sORFs_org_Human	Intronic sORF	HEK293T
2925	66	GTG ...	VEL ...	Ribo-seq	GTG		34	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2923	123	CTG ...	LLQ ...	Ribo-seq	CTG		16	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MM1S, RPE-1
1439616	159	TTG ...	LAS ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	HeLa
2918	129	GTG ...	VML ...	Ribo-seq	GTG		15	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, LCL, MM1S, RPE-1
1316391	171	GTG ...	VSA ...	Ribo-seq	GTG		2	sORFs_org_Human	Intronic sORF	HEK293, HeLa
101467	75	CTG ...	LSL ...	Ribo-seq	CTG		8	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, MM1S
1047068	177	ATG ...	MNS ...	Ribo-seq	ATG		1	sORFs_org_Human	Intronic sORF	HEK293
2931	204	CTG ...	LLH ...	Ribo-seq	CTG		29	sORFs_org_Human	Intronic sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1, U2OS
1204965	45	GTG ...	VYC ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	Intronic sORF	HAP1, HEK293, HeLa
905593	96	TCA ...	SSF ...	Ribo-seq	TCA		2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
3200111	48	GAA ...	ELK ...	Ribo-seq	GAA	weak	1	sORFs_org_Human	Intronic sORF	HEK293
905587	105	TTT ...	FDH ...	Ribo-seq	TTT		2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
3200113	66	GGA ...	GHL ...	Ribo-seq	GGA		1	sORFs_org_Human	Intronic sORF	HEK293
905582	141	ATT ...	IVR ...	Ribo-seq	ATT		1	sORFs_org_Human	Intronic sORF	Jurkat
3200103	183	TTA ...	LTI ...	Ribo-seq	TTA		1	sORFs_org_Human	Intronic sORF	HEK293
3200107	138	TAT ...	YQN ...	Ribo-seq	TAT		1	sORFs_org_Human	Intronic sORF	HEK293
2929	129	TTG ...	LKD ...	Ribo-seq	TTG		25	sORFs_org_Human	Intronic sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1, U2OS
905577	54	GGT ...	GGI ...	Ribo-seq	GGT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
407105	165	ACT ...	TFM ...	Ribo-seq	ACT		2	sORFs_org_Human	Intronic sORF	HCT116, HEK293
905599	42	TGC ...	CKI ...	Ribo-seq	TGC		1	sORFs_org_Human	Intronic sORF	Jurkat
407103	105	CAT ...	HHM ...	Ribo-seq	CAT		3	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
1136542	99	ATG ...	MKS ...	Ribo-seq	ATG		1	sORFs_org_Human	Intronic sORF	HEK293

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