Transcript 102918

Transcript

ID CARD

MetamORF ID

102918

ENST00000526449

Name

EIF1AD-203

Strand

Biotype

retained_intron

Start-end positions

65999898-66002157

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

HGNC:28147

Aliases

EIF1AD,
ENSG00000175376, haponin, HGNC:28147,
MGC11102, NCBI:84285, OFF:EIF1AD

Chr 11

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
287846	36	TTG ...	LDW ...	Ribo-seq	TTG	moderate	18	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
1507690	45	GTG ...	VLL ...	Ribo-seq	GTG		5	sORFs_org_Human	Intronic sORF	BJ, hES, MDA-MB-231, MM1S, RPE-1
1440585	120	GTG ...	VDD ...	Ribo-seq	GTG		4	sORFs_org_Human	Intronic sORF	BJ, hES, MM1S, RPE-1
102917	33	CTG ...	LPS ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	Intronic sORF	BJ, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1
909901	57	CGC ...	RTP ...	Ribo-seq	CGC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
909897	111	CCT ...	PLS ...	Ribo-seq	CCT		1	sORFs_org_Human	Intronic sORF	Jurkat
909893	30	CCA ...	PSK ...	Ribo-seq	CCA	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
1317748	261	CTG ...	LGS ...	Ribo-seq	CTG		3	sORFs_org_Human	Intronic sORF	HEK293, HeLa, MM1S
909899	270	GGA ...	GRS ...	Ribo-seq	GGA		1	sORFs_org_Human	Intronic sORF	Jurkat
408230	123	GTC ...	VVD ...	Ribo-seq	GTC		1	sORFs_org_Human	Intronic sORF	HCT116
2317586	39	ATG ...	MRW ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Intronic sORF	MDA-MB-231
102920	39	CTG ...	LSL ...	Ribo-seq	CTG	moderate	12	sORFs_org_Human	Intronic sORF	HAP1, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1
909895	42	GTT ...	VLS ...	Ribo-seq	GTT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
909886	36	AGG ...	RWR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
530099	30	CTG ...	LCF ...	Ribo-seq	CTG		13	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, MDA-MB-231, MM1S, RPE-1, U2OS
287842	39	GTG ...	VGT ...	Ribo-seq	GTG	moderate	13	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1507688	42	TTG ...	LLR ...	Ribo-seq	TTG		5	sORFs_org_Human	Intronic sORF	BJ, hES, MDA-MB-231, MM1S, RPE-1
3115210	63	CTG ...	LGA ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	hES
909905	90	CGG ...	RFS ...	Ribo-seq	CGG		1	sORFs_org_Human	Intronic sORF	Jurkat
909889	51	TGT ...	CGT ...	Ribo-seq	TGT	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
287844	42	CTG ...	LVG ...	Ribo-seq	CTG	strong	14	sORFs_org_Human	Intronic sORF	Blood, guo_2014, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
909891	240	CAA ...	QGT ...	Ribo-seq	CAA		1	sORFs_org_Human	Intronic sORF	Jurkat

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