Transcript 4894 | MetamORF

Transcript

ID CARD

MetamORF ID

4894

ENST00000621096

Name

EHD1-213

Strand

Biotype

protein_coding

Start-end positions

64852727-64879713

CDS Start-stop positions

64854333-64879630

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

HGNC:3242

Aliases

EHD1,
ENSG00000110047, FLJ42622, FLJ44618,
H-PAST, HGNC:3242, HPAST1,
NCBI:10938, OFF:EHD1, PAST1

Chr 11

ORFs

36 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
909215	99	ACT ...	TRP ...	Ribo-seq	ACT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
287185	45	CTG ...	LVP ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	InCDS Overlapping sORF	BJ, HeLa, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
287189	69	GTG ...	VWT ...	Ribo-seq	GTG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, LCL, MDA-MB-231, Monocyte, RPE-1
287187	105	GTG ...	VVP ...	Ribo-seq	GTG	moderate	7	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, RPE-1
909221	234	TGT ...	CSA ...	Ribo-seq	TGT	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Breast, HEK293, HeLa, Jurkat, THP-1
909217	123	AGC ...	STT ...	Ribo-seq	AGC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
909201	36	GGC ...	GAE ...	Ribo-seq	GGC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
287191	69	GTG ...	VVR ...	Ribo-seq	GTG	strong	9	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HeLa, hES, LCL, MDA-MB-231, RPE-1
287193	99	TTG ...	LQP ...	Ribo-seq	TTG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, LCL, MDA-MB-231, Monocyte, RPE-1
909207	72	AGC ...	SVW ...	Ribo-seq	AGC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
909213	141	TAT ...	YGA ...	Ribo-seq	TAT	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
294706	75	CTG ...	LGT ...	Ribo-seq	CTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1
287175	33	ATG ...	MTC ...	Ribo-seq	ATG	weak	12	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HAP1, HEK293, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, RPE-1
287177	33	TTG ...	LVK ...	Ribo-seq	TTG	moderate	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, hES, HFF, LCL, MDA-MB-231, RPE-1
287171	48	CTG ...	LST ...	Ribo-seq	CTG	weak	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1
287197	96	GTG ...	VCP ...	Ribo-seq	GTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1
287169	150	CTG ...	LEA ...	Ribo-seq	CTG	strong	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
294710	198	GTG ...	VPS ...	Ribo-seq	GTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, LCL, MDA-MB-231, Monocyte, RPE-1
909223	84	CCC ...	PRV ...	Ribo-seq	CCC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
287204	60	CTG ...	LGQ ...	Ribo-seq	CTG	moderate	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, MM1S, Monocyte, RPE-1, THP-1
287202	213	ATG ...	MPA ...	Ribo-seq	ATG	moderate	14	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1
909194	189	GGT ...	GEV ...	Ribo-seq	GGT	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
4893	78	CTG ...	LTS ...	Ribo-seq	CTG	moderate	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1, U2OS
909205	51	GGA ...	GPH ...	Ribo-seq	GGA	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
909219	54	CAG ...	QQG ...	Ribo-seq	CAG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
909196	198	GAA ...	EGD ...	Ribo-seq	GAA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
909211	129	CGT ...	RGA ...	Ribo-seq	CGT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
287183	81	TTG ...	LRP ...	Ribo-seq	TTG	weak	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1
287179	39	ATG ...	MSL ...	Ribo-seq	ATG	weak	10	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1
909198	93	GCA ...	ART ...	Ribo-seq	GCA	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
287195	105	ATG ...	MTL ...	Ribo-seq	ATG	moderate	10	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1
294712	261	CTG ...	LQP ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1
294708	135	CTG ...	LER ...	Ribo-seq	CTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, LCL, MDA-MB-231, Monocyte, RPE-1
287200	171	CTG ...	LRG ...	Ribo-seq	CTG	weak	12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HeLa, hES, HFF, LCL, MDA-MB-231, Monocyte, RPE-1
909209	162	GCC ...	APL ...	Ribo-seq	GCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
287173	288	GTG ...	VGG ...	Ribo-seq	GTG	strong	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1

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