Transcript 86987 | MetamORF

Transcript

ID CARD

MetamORF ID

86987

ENST00000263697

Name

DNAJC8-201

Strand

Biotype

protein_coding

Start-end positions

28200278-28233025

CDS Start-stop positions

28201248-28232998

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:15470

Aliases

DNAJC8,
ENSG00000126698, HGNC:15470, NCBI:22826,
OFF:DNAJC8, SPF31

Chr 1

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
86991	93	ATG ...	MLT ...	Ribo-seq	ATG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MM1S, RPE-1, U2OS
478820	171	ATG ...	MFC ...	Ribo-seq	ATG		6	sORFs_org_Human	InCDS Overlapping sORF	HAP1, HEK293, HEK293T, MM1S
882596	66	AAG ...	KLW ...	Ribo-seq	AAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
86986	69	TTG ...	LKL ...	Ribo-seq	TTG		25	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
86996	96	ATG ...	MML ...	Ribo-seq	ATG		14	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MM1S, RPE-1, U2OS
1294805	192	TTG ...	LQK ...	Ribo-seq	TTG		2	sORFs_org_Human	InCDS Overlapping sORF	HEK293, HEK293T
3409453	762	ATG ...	MAA ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
86989	90	CTG ...	LTE ...	Ribo-seq	CTG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MM1S, RPE-1, U2OS
478828	111	CTG ...	LTK ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, HEK293T, hES, MM1S

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