Transcript 13094 | MetamORF

Transcript

ID CARD

MetamORF ID

13094

ENST00000551912

Name

DDX54-209

Strand

Biotype

processed_transcript

Start-end positions

113158842-113161456

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGC ...

Genome browsers

UCSC

Gene

HGNC:20084

Aliases

APR-5,
DDX54, DP97, ENSG00000123064,
HGNC:20084, MGC2835, NCBI:79039,
OFF:DDX54

Chr 12

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
412206	279	GAC ...	DEE ...	Ribo-seq	GAC		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
309349	162	ATG ...	MIV ...	Ribo-seq	ATG		3	sORFs_org_Human	ncRNA sORF	HEK293, LCL, MDA-MB-231
13093	66	CTG ...	LQQ ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, hES, RPE-1, THP-1
926451	48	GGC ...	GRG ...	Ribo-seq	GGC	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
1831595	78	GTG ...	VHP ...	Ribo-seq	GTG	weak	3	sORFs_org_Human	ncRNA sORF	HeLa, MDA-MB-231
13098	132	CTG ...	LHF ...	Ribo-seq	CTG	moderate	12	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
412210	147	ATG ...	MIV ...	Ribo-seq	ATG		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
13096	123	CTG ...	LQR ...	Ribo-seq	CTG	weak	12	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
309347	156	GTG ...	VTR ...	Ribo-seq	GTG		3	sORFs_org_Human	ncRNA sORF	HEK293, LCL, MDA-MB-231
412208	138	ACT ...	TRT ...	Ribo-seq	ACT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
309345	165	TTG ...	LMI ...	Ribo-seq	TTG		3	sORFs_org_Human	ncRNA sORF	HEK293, LCL, MDA-MB-231
926453	264	TCT ...	SDR ...	Ribo-seq	TCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
708272	288	TCT ...	SDR ...	Ribo-seq	TCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
1831597	90	CTG ...	LSQ ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HeLa
2346409	132	CTG ...	LTG ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	MDA-MB-231
13100	159	CTG ...	LKQ ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	ncRNA sORF	BJ, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
304444	48	CTG ...	LQA ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, LCL, MDA-MB-231

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