Transcript 14380 | MetamORF

Transcript

ID CARD

MetamORF ID

14380

ENST00000308025

Name

DDX23-201

Strand

Biotype

protein_coding

Start-end positions

48829764-48852163

CDS Start-stop positions

48830469-48845782

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

HGNC:17347

Aliases

DDX23,
ENSG00000174243, HGNC:17347, NCBI:9416,
OFF:DDX23, prp28, PRPF28,
SNRNP100, U5-100K

Chr 12

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
14384	144	ATG ...	MKR ...	Ribo-seq	ATG		14	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
707410	162	ACA ...	TET ...	Ribo-seq	ACA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
14386	195	CTG ...	LVE ...	Ribo-seq	CTG		18	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
14382	135	ATG ...	MNM ...	Ribo-seq	ATG		16	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1, THP-1
307469	72	CTG ...	LWL ...	Ribo-seq	CTG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	LCL, MDA-MB-231
1052400	231	ATG ...	MWT ...	Ribo-seq	ATG		7	sORFs_org_Human	InCDS Overlapping sORF	BJ, HAP1, HEK293, HeLa, hES
707406	72	AAA ...	KRL ...	Ribo-seq	AAA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1828215	69	GTG ...	VES ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Downstream sORF	HeLa
707412	189	GAG ...	EEK ...	Ribo-seq	GAG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2344374	60	TTG ...	LVA ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2344378	171	GTG ...	VAR ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2344380	177	CTG ...	LAV ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
1828213	51	CTG ...	LDS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
2344390	216	TTG ...	LGY ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
14379	57	GTG ...	VAS ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
307467	66	CTG ...	LSL ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, LCL, MDA-MB-231
1052402	234	GTG ...	VMW ...	Ribo-seq	GTG		6	sORFs_org_Human	InCDS Overlapping sORF	HAP1, HEK293, HeLa, hES
2344384	189	GTG ...	VWL ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
707408	153	CTA ...	LRR ...	Ribo-seq	CTA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2344388	201	GTG ...	VTS ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
307472	285	CTG ...	LQK ...	Ribo-seq	CTG		1	sORFs_org_Human	InCDS Overlapping sORF	LCL
1052398	222	TTG ...	LFL ...	Ribo-seq	TTG		11	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES
2344382	183	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231
2344386	192	TTG ...	LVW ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	MDA-MB-231

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