Transcript 8874 | MetamORF

Transcript

ID CARD

MetamORF ID

8874

ENST00000376561

Name

CTTN-203

Strand

Biotype

protein_coding

Start-end positions

70398541-70436579

CDS Start-stop positions

70407298-70436408

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

HGNC:3338

Aliases

CTTN,
EMS1, ENSG00000085733, HGNC:3338,
NCBI:2017, OFF:CTTN

Chr 11

ORFs

42 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
8882	150	TTG ...	LVW ...	Ribo-seq	TTG		15	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1
1298877	57	GTG ...	VAS ...	Ribo-seq	GTG		13	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1
483966	33	ATG ...	MRM ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
530792	51	GTG ...	VNS ...	Ribo-seq	GTG		13	sORFs_org_Human	Alternative sORF Upstream	BJ, guo_2014, HAP1, HEK293, HeLa, hES, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
1049769	45	ATG ...	MTR ...	Ribo-seq	ATG		10	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, RPE-1
1512967	57	GTG ...	VPR ...	Ribo-seq	GTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, hES, MDA-MB-231
1301667	81	ATT ...	IGL ...	Ribo-seq	ATT		2	sORFs_org_Human	Alternative sORF Upstream	BJ, HEK293
3201276	117	GCA ...	ARV ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
103226	51	ATG ...	MPG ...	Ribo-seq	ATG	weak	20	sORFs_org_Human Johnstone2016	Alternative sORF Upstream	Blood, Brain, Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1
3309112	1905	ATG ...	MWK ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
103234	45	ATG ...	MCP ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
8884	147	GTG ...	VWN ...	Ribo-seq	GTG		15	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1
1206702	66	CTG ...	LCP ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
483962	54	ATG ...	MSP ...	Ribo-seq	ATG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, HFF, MDA-MB-231, RPE-1
483958	72	ATG ...	MRQ ...	Ribo-seq	ATG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1
1732662	36	GTG ...	VSR ...	Ribo-seq	GTG		10	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1298879	39	TTG ...	LVS ...	Ribo-seq	TTG		11	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
1512965	96	ATG ...	MGC ...	Ribo-seq	ATG		8	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
530790	72	CTG ...	LCF ...	Ribo-seq	CTG		19	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
8876	192	TTG ...	LKQ ...	Ribo-seq	TTG		17	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1994507	189	GTG ...	VWL ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa
1994505	201	GTG ...	VLW ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, hES, RPE-1
1208904	63	CTG ...	LCP ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
103228	33	TTG ...	LDY ...	Ribo-seq	TTG	moderate	18	sORFs_org_Human	Alternative sORF Upstream	Blood, Flp-In_T-REx-293, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1
8873	231	ATG ...	MSF ...	Ribo-seq	ATG		18	sORFs_org_Human Johnstone2016	InCDS Overlapping sORF	BJ, Blood, Brain_tumor, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1633254	48	ATG ...	MTR ...	Ribo-seq	ATG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, RPE-1
530794	45	GTG ...	VES ...	Ribo-seq	GTG	strong	18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1, U2OS
1822847	54	ATG ...	MSN ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
483960	60	TTG ...	LRM ...	Ribo-seq	TTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, MDA-MB-231, RPE-1
8878	168	ATG ...	MAM ...	Ribo-seq	ATG		14	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
2689759	129	CTG ...	LGA ...	Ribo-seq	CTG		1	sORFs_org_Human	sORF Upstream	RPE-1
408477	30	GAT ...	DYC ...	Ribo-seq	GAT	weak	1	sORFs_org_Human	Alternative sORF Upstream	HCT116
1301665	36	TGC ...	CLE ...	Ribo-seq	TGC	weak	5	sORFs_org_Human	sORF Upstream	BJ, HEK293, HeLa, THP-1
1208907	30	ATG ...	MTG ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HeLa, hES, HFF, RPE-1
8886	117	CTG ...	LSA ...	Ribo-seq	CTG		15	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1
1206697	33	CTG ...	LEI ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	sORF Upstream	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
2616519	93	TGG ...	WKF ...	Ribo-seq	TGG		2	sORFs_org_Human	Alternative sORF Upstream	HeLa, THP-1
8880	162	ATG ...	MEG ...	Ribo-seq	ATG		14	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
483955	102	ATG ...	MGC ...	Ribo-seq	ATG		13	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, HFF, MDA-MB-231, RPE-1
1508414	66	CTG ...	LGA ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF Upstream	BJ, RPE-1
1512963	78	GTG ...	VRR ...	Ribo-seq	GTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, hES, MDA-MB-231
483964	36	CTG ...	LPT ...	Ribo-seq	CTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES

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