Transcript 4710 | MetamORF

Transcript

ID CARD

MetamORF ID

4710

ENST00000314133

Name

COX8A-201

Strand

Biotype

protein_coding

Start-end positions

63974607-63976543

CDS Start-stop positions

63974681-63976320

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

HGNC:2294

Aliases

COX,
COX8, COX8-2, COX8A,
COX8L, ENSG00000176340, HGNC:2294,
NCBI:1351, OFF:COX8A, VIII,
VIII-L

Chr 11

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
409646	66	CGT ...	RCR ...	Ribo-seq	CGT		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, HeLa, THP-1
3307819	210	ATG ...	MSV ...	Predicted Ribo-seq	ATG		2	Mackowiak2015 Johnstone2016	CDS sORF	Brain_tumor, HEK293, HeLa, HFF
908847	132	GCG ...	AGL ...	Ribo-seq	GCG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, Jurkat, THP-1
1317380	60	ATG ...	MSF ...	Ribo-seq	ATG	moderate	2	sORFs_org_Human Johnstone2016	Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
908845	192	GCT ...	ADR ...	Ribo-seq	GCT		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
286948	33	GTG ...	VVY ...	Ribo-seq	GTG	moderate	27	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1726182	33	GTG ...	VKG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	Alternative Downstream Overlapping sORF	Blood, HeLa
4709	180	TTG ...	LWC ...	Ribo-seq	TTG		32	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
1309980	30	CGC ...	RRR ...	Ribo-seq	CGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
4712	102	CTG ...	LLR ...	Ribo-seq	CTG	weak	32	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1301622	201	TGG ...	WAT ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ
908852	123	ATT ...	IGR ...	Ribo-seq	ATT	strong	1	sORFs_org_Human	Alternative Downstream Overlapping sORF	Jurkat
286950	30	GTG ...	VYS ...	Ribo-seq	GTG	moderate	25	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
407875	81	CCA ...	PFV ...	Ribo-seq	CCA		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, HEK293
908849	84	GAT ...	DPF ...	Ribo-seq	GAT		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, Jurkat, THP-1
1310182	60	CGC ...	RRR ...	Ribo-seq	CGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
3200543	126	CTT ...	LDR ...	Ribo-seq	CTT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
407877	36	CGT ...	RCR ...	Ribo-seq	CGT		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, HeLa, Jurkat, THP-1
908854	78	GCT ...	AGS ...	Ribo-seq	GCT	moderate	1	sORFs_org_Human	Downstream Overlapping sORF	Jurkat
102569	72	CTG ...	LDP ...	Ribo-seq	CTG	strong	17	sORFs_org_Human	Alternative Downstream Overlapping sORF	BJ, Blood, guo_2014, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS

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