Transcript 3136 | MetamORF

Transcript

ID CARD

MetamORF ID

3136

ENST00000526789

Name

COMMD9-204

Strand

Biotype

retained_intron

Start-end positions

36278201-36289428

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

HGNC:25014

Aliases

COMMD9,
ENSG00000110442, FLJ31106, HGNC:25014,
HSPC166, NCBI:29099, OFF:COMMD9

Chr 11

ORFs

36 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3145	111	GTG ...	VAF ...	Ribo-seq	GTG	moderate	20	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
3151	144	CTG ...	LLQ ...	Ribo-seq	CTG	moderate	19	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
906010	33	AAG ...	KKA ...	Ribo-seq	AAG	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
1047240	60	ATG ...	MFQ ...	Ribo-seq	ATG		5	sORFs_org_Human	Intronic sORF	Flp-In_T-REx-293, HEK293, HeLa, RPE-1
1439752	195	CTG ...	LCQ ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HeLa
3140	96	CTG ...	LSS ...	Ribo-seq	CTG	moderate	17	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
906021	129	CAA ...	QGK ...	Ribo-seq	CAA		1	sORFs_org_Human	Intronic sORF	Jurkat
906019	141	CTC ...	LER ...	Ribo-seq	CTC		1	sORFs_org_Human	Intronic sORF	Jurkat
3135	33	CTG ...	LLT ...	Ribo-seq	CTG	moderate	14	sORFs_org_Human	Intronic sORF	Blood, Brain, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
906000	48	GTC ...	VCD ...	Ribo-seq	GTC		1	sORFs_org_Human	Intronic sORF	Jurkat
905996	123	CTC ...	LTR ...	Ribo-seq	CTC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
905994	108	GCA ...	AFR ...	Ribo-seq	GCA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
3149	132	CTG ...	LHR ...	Ribo-seq	CTG	moderate	19	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
906015	51	TTG ...	LSD ...	Ribo-seq	TTG	moderate	17	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, Jurkat, MDA-MB-231, MM1S, RPE-1
906025	195	CTG ...	LTA ...	Ribo-seq	CTG		2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
906017	210	GAT ...	DVV ...	Ribo-seq	GAT		1	sORFs_org_Human	Intronic sORF	Jurkat
3133	30	CTG ...	LTK ...	Ribo-seq	CTG	weak	14	sORFs_org_Human	Intronic sORF	Blood, Brain, HEK293, HeLa, hES, Jurkat, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
906004	138	ACA ...	TCS ...	Ribo-seq	ACA		1	sORFs_org_Human	Intronic sORF	Jurkat
906029	177	GAT ...	DGC ...	Ribo-seq	GAT		5	sORFs_org_Human	Intronic sORF	HEK293, HeLa, Jurkat, THP-1
1047243	54	ATG ...	MLS ...	Ribo-seq	ATG	moderate	17	sORFs_org_Human	Intronic sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, MM1S, RPE-1
3147	114	CTG ...	LVA ...	Ribo-seq	CTG	strong	20	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
905998	42	GAC ...	DPG ...	Ribo-seq	GAC		1	sORFs_org_Human	Intronic sORF	Jurkat
906013	201	AGA ...	RQL ...	Ribo-seq	AGA		1	sORFs_org_Human	Intronic sORF	Jurkat
3138	75	CTG ...	LAL ...	Ribo-seq	CTG	strong	14	sORFs_org_Human	Intronic sORF	Brain, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
527556	117	GTG ...	VSR ...	Ribo-seq	GTG		10	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, hES, Jurkat, MDA-MB-231, RPE-1, U2OS
906008	87	TGG ...	WLE ...	Ribo-seq	TGG		1	sORFs_org_Human	Intronic sORF	Jurkat
1439750	159	TTG ...	LKK ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	HeLa
2313068	63	CTG ...	LPR ...	Ribo-seq	CTG	weak	3	sORFs_org_Human	Intronic sORF	hES, MDA-MB-231, RPE-1
481991	30	TTG ...	LQH ...	Ribo-seq	TTG		7	sORFs_org_Human	Intronic sORF	BJ, HEK293T, HeLa, MDA-MB-231, RPE-1, THP-1
906027	201	GCT ...	AAL ...	Ribo-seq	GCT		2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
906002	54	CAG ...	QLV ...	Ribo-seq	CAG		1	sORFs_org_Human	Intronic sORF	Jurkat
905992	72	GCT ...	ALF ...	Ribo-seq	GCT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
407241	153	AAA ...	KLL ...	Ribo-seq	AAA		1	sORFs_org_Human	Intronic sORF	HCT116
906006	72	CTT ...	LGC ...	Ribo-seq	CTT		1	sORFs_org_Human	Intronic sORF	Jurkat
1987702	75	GTG ...	VTC ...	Ribo-seq	GTG	weak	4	sORFs_org_Human	Intronic sORF	HeLa, hES, MDA-MB-231, RPE-1
906023	144	ACT ...	TPE ...	Ribo-seq	ACT		1	sORFs_org_Human	Intronic sORF	Jurkat

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