Transcript 11406 | MetamORF

Transcript

ID CARD

MetamORF ID

11406

ENST00000551720

Name

CNPY2-210

Strand

Biotype

processed_transcript

Start-end positions

56311338-56316119

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

HGNC:13529

Aliases

Cnpy2,
CNPY2, ENSG00000257727, HGNC:13529,
HP10390, NCBI:10330, OFF:CNPY2,
TMEM4, ZSIG9

Chr 12

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
11405	57	ATG ...	MPA ...	Ribo-seq	ATG		21	sORFs_org_Human	ncRNA sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
15004	258	CTG ...	LEN ...	Ribo-seq	CTG		33	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
11408	57	GTG ...	VEV ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HeLa, HFF
11411	60	GTG ...	VVE ...	Ribo-seq	GTG		5	sORFs_org_Human	ncRNA sORF	guo_2014, HEK293, HeLa, HFF
300810	72	CTG ...	LRT ...	Ribo-seq	CTG		8	sORFs_org_Human	ncRNA sORF	BJ, guo_2014, HEK293T, HeLa, LCL, MM1S, THP-1, U2OS
15006	282	GTG ...	VCG ...	Ribo-seq	GTG		32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
708579	159	ACG ...	TAA ...	Ribo-seq	ACG		6	sORFs_org_Human	ncRNA sORF	BJ, Breast, HEK293, HeLa, Jurkat, THP-1
15002	192	GTG ...	VRV ...	Ribo-seq	GTG		32	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
708577	246	GGA ...	GQP ...	Ribo-seq	GGA		1	sORFs_org_Human	ncRNA sORF	Jurkat
1322485	57	GTG ...	VSD ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	ncRNA sORF	HEK293
413326	240	CCC ...	PCS ...	Ribo-seq	CCC		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat
15000	231	CTG ...	LQP ...	Ribo-seq	CTG		31	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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