Transcript 6161 | MetamORF

Transcript

ID CARD

MetamORF ID

6161

ENST00000527133

Name

CLNS1A-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

77619606-77637782

CDS Start-stop positions

77625794-77637714

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:2080

Aliases

CLCI,
CLNS1A, ENSG00000074201, HGNC:2080,
ICln, NCBI:1207, OFF:CLNS1A

Chr 11

ORFs

42 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1206909	72	ATG ...	MLN ...	Ribo-seq	ATG		4	sORFs_org_Human	Alternative Downstream NMD sORF	HAP1, HeLa, hES
636477	117	CTG ...	LCS ...	Ribo-seq	CTG	weak	5	sORFs_org_Human	NMD Overlapping sORF Upstream	Blood, HeLa, MDA-MB-231, MM1S, THP-1
911447	69	CCA ...	PDT ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
3224649	57	CTG ...	LNL ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa
1441029	84	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa
636483	132	GTG ...	VVH ...	Ribo-seq	GTG	strong	3	sORFs_org_Human	NMD Overlapping sORF Upstream	Blood, MDA-MB-231, THP-1
911439	63	CTA ...	LGE ...	Ribo-seq	CTA		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
289218	102	CTG ...	LMK ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative Downstream NMD Overlapping sORF	HAP1, HeLa, LCL, RPE-1
6175	54	GTG ...	VLN ...	Ribo-seq	GTG		33	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
103442	30	ATG ...	MPN ...	Ribo-seq	ATG		5	sORFs_org_Human	InCDS NMD Overlapping sORF	HEK293, hES
103444	39	GTG ...	VNA ...	Ribo-seq	GTG		10	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES
6173	51	CTG ...	LNG ...	Ribo-seq	CTG		33	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
6165	33	ATG ...	MHY ...	Ribo-seq	ATG		30	sORFs_org_Human	InCDS NMD Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
911449	93	GCG ...	AEG ...	Ribo-seq	GCG		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
6163	45	CTG ...	LSR ...	Ribo-seq	CTG		23	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
408627	93	CAT ...	HAL ...	Ribo-seq	CAT		3	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HCT116, HEK293, Jurkat
911451	123	TTC ...	FLK ...	Ribo-seq	TTC		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
911434	66	AAC ...	NLL ...	Ribo-seq	AAC		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
6167	117	CTG ...	LEY ...	Ribo-seq	CTG		26	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, loayza_puch_2016, MM1S, RPE-1, U2OS
289216	99	ATG ...	MKK ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative Downstream NMD sORF	HAP1, HeLa, LCL, RPE-1
6177	81	CTG ...	LRQ ...	Ribo-seq	CTG		33	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1318261	36	GTG ...	VIN ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	HEK293
636481	129	GTG ...	VHA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Human	NMD Overlapping sORF Upstream	MDA-MB-231, THP-1
911437	36	AAT ...	NAK ...	Ribo-seq	AAT		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
289214	81	GTG ...	VMM ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative Downstream NMD sORF	Flp-In_T-REx-293, HAP1, HeLa, hES, LCL, THP-1
1508894	54	CTG ...	LGQ ...	Ribo-seq	CTG	moderate	6	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, HEK293, HeLa, MDA-MB-231
1441031	117	CTG ...	LER ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa
3316684	150	ATG ...	MSF ...	Predicted	ATG		1	Mackowiak2015	CDS NMD sORF
911445	36	TGG ...	WIR ...	Ribo-seq	TGG		2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HEK293, Jurkat
911443	108	CCC ...	PTI ...	Ribo-seq	CCC		1	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Jurkat
289210	75	ATG ...	MML ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative Downstream NMD sORF	HAP1, HeLa, hES, LCL
3224647	45	TTG ...	LCL ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa
6171	153	CTG ...	LSW ...	Ribo-seq	CTG		30	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, THP-1, U2OS
1206907	69	TTG ...	LNL ...	Ribo-seq	TTG		3	sORFs_org_Human	Alternative Downstream NMD sORF	HAP1, HeLa
289220	105	TTG ...	LLM ...	Ribo-seq	TTG		9	sORFs_org_Human	Alternative Downstream NMD Overlapping sORF	HAP1, HCT116, HEK293, HEK293T, HeLa, Jurkat, LCL, RPE-1
289222	108	CTG ...	LLL ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative Downstream NMD Overlapping sORF	HEK293, HeLa, LCL, RPE-1
1318269	48	GTG ...	VLQ ...	Ribo-seq	GTG	moderate	3	sORFs_org_Human	Alternative NMD Overlapping sORF Upstream	HEK293, MM1S, RPE-1
6169	51	TTG ...	LVR ...	Ribo-seq	TTG		13	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HAP1, HEK293, HEK293T, HeLa, hES, LCL, MM1S, RPE-1
408625	87	TTA ...	LSR ...	Ribo-seq	TTA		2	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	HCT116, Jurkat
6160	51	TTG ...	LYV ...	Ribo-seq	TTG		12	sORFs_org_Human	Alternative InCDS NMD Overlapping sORF	Brain, guo_2014, HAP1, HEK293, HeLa, hES, RPE-1
636479	120	TTG ...	LLC ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	NMD Overlapping sORF Upstream	BJ, Blood, HeLa, MDA-MB-231, THP-1
289212	78	ATG ...	MMM ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative Downstream NMD sORF	HAP1, HeLa, hES, LCL

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