Transcript 109790

Transcript

ID CARD

MetamORF ID

109790

ENST00000378026

Name

CKAP4-201

Strand

Biotype

protein_coding

Start-end positions

106237877-106247988

CDS Start-stop positions

106239024-106247851

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

HGNC:16991

Aliases

CKAP4,
CLIMP-63, ENSG00000136026, ERGIC-63,
HGNC:16991, NCBI:10970, OFF:CKAP4,
P63

Chr 12

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
109794	48	GTG ...	VGH ...	Ribo-seq	GTG	strong	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, guo_2014, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
1831034	63	ATG ...	MRY ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
1831030	39	TTG ...	LNR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
3202013	135	CCT ...	PES ...	Ribo-seq	CCT	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
540347	138	CTG ...	LRA ...	Ribo-seq	CTG	weak	12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
2617501	255	GGC ...	GTP ...	Ribo-seq	GGC	weak	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, THP-1
540349	165	ATG ...	MGC ...	Ribo-seq	ATG	strong	13	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Brain_tumor, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS
303356	33	CTG ...	LTS ...	Ribo-seq	CTG	moderate	12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
3202017	243	AAA ...	KES ...	Ribo-seq	AAA	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
3202015	93	AGG ...	RST ...	Ribo-seq	AGG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
109792	66	CTG ...	LRS ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HEK293, hES, HFF, MDA-MB-231, RPE-1, U2OS
12582	42	ATG ...	MRF ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
109789	222	TTG ...	LRH ...	Ribo-seq	TTG	weak	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, U2OS
303350	39	CTG ...	LLW ...	Ribo-seq	CTG	moderate	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS
3330826	1809	ATG ...	MPS ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
303354	135	GTG ...	VWA ...	Ribo-seq	GTG	moderate	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1, U2OS
3202011	60	CTC ...	LGQ ...	Ribo-seq	CTC	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
1831032	51	TTG ...	LSS ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
303348	36	CTG ...	LWT ...	Ribo-seq	CTG	weak	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, U2OS

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