Transcript 3284 | MetamORF

Transcript

ID CARD

MetamORF ID

3284

ENST00000395290

Name

CELF1-204

Strand

Biotype

protein_coding

Start-end positions

47465944-47489024

CDS Start-stop positions

47472230-47489014

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

HGNC:2549

Aliases

BRUNOL2,
CELF1, CUG-BP, CUGBP,
CUGBP1, EDEN-BP, ENSG00000149187,
HGNC:2549, hNab50, NAB50,
NAPOR, NCBI:10658, OFF:CELF1

Chr 11

ORFs

102 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
906715	48	TAC ...	YQC ...	Ribo-seq	TAC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
8050	135	CTG ...	LLE ...	Ribo-seq	CTG		14	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
284872	36	CTG ...	LRS ...	Ribo-seq	CTG	weak	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
407336	45	GTT ...	VRR ...	Ribo-seq	GTT	moderate	2	sORFs_org_Human	Alternative Downstream Overlapping sORF	HCT116, Jurkat
1820699	48	GTG ...	VAS ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
284862	36	ATG ...	MTA ...	Ribo-seq	ATG	moderate	4	sORFs_org_Human	Alternative Downstream Overlapping sORF	HEK293, HeLa, LCL
1820705	138	TTG ...	LFF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1820707	159	GTG ...	VGL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
8058	33	ATG ...	MLA ...	Ribo-seq	ATG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
906741	171	TTG ...	LCI ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
8076	45	GTG ...	VRR ...	Ribo-seq	GTG		19	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
284887	39	TTG ...	LKN ...	Ribo-seq	TTG	moderate	19	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
3300	63	CTG ...	LKR ...	Ribo-seq	CTG	moderate	19	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
8052	138	GTG ...	VLL ...	Ribo-seq	GTG		15	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
284864	33	TTG ...	LGM ...	Ribo-seq	TTG	moderate	15	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
906719	33	CAC ...	HPE ...	Ribo-seq	CAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
937358	114	GTG ...	VAF ...	Ribo-seq	GTG	strong	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1
916131	60	CTA ...	LSR ...	Ribo-seq	CTA		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
8080	54	CTG ...	LLT ...	Ribo-seq	CTG		22	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
906751	63	AAA ...	KTR ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3290	48	TTG ...	LDR ...	Ribo-seq	TTG	moderate	24	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
284876	42	CTG ...	LLL ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
8048	132	CTG ...	LEA ...	Ribo-seq	CTG		14	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
101839	90	TTG ...	LWA ...	Ribo-seq	TTG	weak	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
906707	42	TGG ...	WSN ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
8066	102	GTG ...	VVP ...	Ribo-seq	GTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
527995	30	GTG ...	VLF ...	Ribo-seq	GTG	moderate	9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1, U2OS
3296	33	TTG ...	LLH ...	Ribo-seq	TTG	moderate	11	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, MDA-MB-231, RPE-1
101841	105	ATG ...	MLS ...	Ribo-seq	ATG	weak	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
3288	105	CTG ...	LIH ...	Ribo-seq	CTG	weak	21	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
1820719	60	CTG ...	LLF ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
8062	54	CTG ...	LEQ ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
906733	30	CTC ...	LIT ...	Ribo-seq	CTC	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1820725	60	ATG ...	MIR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1820709	171	CTG ...	LCN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
101843	108	TTG ...	LML ...	Ribo-seq	TTG	moderate	13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
906702	123	GGC ...	GPH ...	Ribo-seq	GGC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
3298	30	ATG ...	MVL ...	Ribo-seq	ATG	strong	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
1205253	132	ATG ...	MVA ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1
3292	75	ATG ...	MTS ...	Ribo-seq	ATG	moderate	21	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
1820695	33	ATG ...	MLE ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
906723	72	GCA ...	AAP ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
8060	42	CTG ...	LAS ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1, U2OS
1820693	42	ATG ...	MSL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
916129	90	CTC ...	LSL ...	Ribo-seq	CTC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1820697	36	CTG ...	LML ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1820701	99	GTG ...	VPK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1820691	48	CTG ...	LQQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
906745	51	CGT ...	RLD ...	Ribo-seq	CGT	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1820717	75	GTG ...	VGV ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Downstream sORF	HeLa
906737	57	GAG ...	EPW ...	Ribo-seq	GAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
284885	108	TTG ...	LLI ...	Ribo-seq	TTG	moderate	20	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
1820715	210	GTG ...	VFL ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
527986	33	TTG ...	LLI ...	Ribo-seq	TTG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1, U2OS
906749	156	AGC ...	SCI ...	Ribo-seq	AGC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
906731	81	AGA ...	RRE ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
906698	39	ACA ...	TIL ...	Ribo-seq	ACA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
906689	30	GCA ...	ASP ...	Ribo-seq	GCA	moderate	2	sORFs_org_Human	Alternative Downstream Overlapping sORF	HEK293, Jurkat
8070	132	CTG ...	LQL ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
3283	66	GTG ...	VIR ...	Ribo-seq	GTG	weak	19	sORFs_org_Human	InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
1205248	102	ATG ...	MAP ...	Ribo-seq	ATG	moderate	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1
8072	135	CTG ...	LLQ ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
3286	69	TTG ...	LVI ...	Ribo-seq	TTG	strong	18	sORFs_org_Human	InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
1205251	129	GTG ...	VAW ...	Ribo-seq	GTG	strong	7	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, MDA-MB-231, RPE-1
1820703	111	TTG ...	LFI ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
906743	42	AGA ...	RLK ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
906696	60	TTC ...	FGP ...	Ribo-seq	TTC	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
8074	33	ATG ...	MWK ...	Ribo-seq	ATG		17	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HCT116, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
284878	45	ATG ...	MLL ...	Ribo-seq	ATG	moderate	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
906747	66	GAG ...	ESC ...	Ribo-seq	GAG	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
906725	33	CAG ...	QHL ...	Ribo-seq	CAG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
407338	36	CGG ...	RHP ...	Ribo-seq	CGG	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
906739	153	TAC ...	YNK ...	Ribo-seq	TAC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
906711	105	CTC ...	LSL ...	Ribo-seq	CTC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1820711	189	TTG ...	LFG ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
101832	33	ATG ...	MQC ...	Ribo-seq	ATG	weak	13	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
916127	72	GTC ...	VPS ...	Ribo-seq	GTC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
906694	54	CCA ...	PSC ...	Ribo-seq	CCA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
916135	75	GGG ...	GIG ...	Ribo-seq	GGG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
3294	81	CTG ...	LKM ...	Ribo-seq	CTG	moderate	21	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
8054	141	TTG ...	LVL ...	Ribo-seq	TTG		15	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
906735	39	CTA ...	LSR ...	Ribo-seq	CTA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
906721	33	AGA ...	RLP ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
906729	204	GCA ...	AAD ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1820723	81	TTG ...	LTP ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
8078	51	CTG ...	LTV ...	Ribo-seq	CTG		19	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
906727	42	AAA ...	KSA ...	Ribo-seq	AAA	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1820721	63	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
906757	42	GGA ...	GLA ...	Ribo-seq	GGA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
8068	123	GTG ...	VQL ...	Ribo-seq	GTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
8056	30	TTG ...	LAL ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1
1820713	204	CTG ...	LFS ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
906755	75	GGG ...	GIG ...	Ribo-seq	GGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
906759	30	CCT ...	PGP ...	Ribo-seq	CCT	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Jurkat
906717	54	AAG ...	KWY ...	Ribo-seq	AAG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
482052	33	CTG ...	LFR ...	Ribo-seq	CTG	moderate	11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1
284882	30	CTG ...	LPP ...	Ribo-seq	CTG	moderate	15	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
906709	78	CCC ...	PHS ...	Ribo-seq	CCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
906704	186	GGC ...	GCF ...	Ribo-seq	GGC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
8064	93	ATG ...	MLS ...	Ribo-seq	ATG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1
284874	39	CTG ...	LLR ...	Ribo-seq	CTG	weak	12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
916133	78	GAG ...	EPW ...	Ribo-seq	GAG		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat

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