Transcript 288273

Transcript

ID CARD

MetamORF ID

288273

ENST00000526447

Name

CDK2AP2-203

Strand

Biotype

retained_intron

Start-end positions

67507211-67508076

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TAC ...

Genome browsers

UCSC

Gene

HGNC:30833

Aliases

CDK2AP2,
DOC-1R, ENSG00000167797, HGNC:30833,
NCBI:10263, OFF:CDK2AP2, p14

Chr 11

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3224041	273	CTG ...	LFN ...	Ribo-seq	CTG		1	sORFs_org_Human	Intronic sORF	HeLa
530433	111	TTG ...	LLQ ...	Ribo-seq	TTG		9	sORFs_org_Human	Intronic sORF	BJ, Blood, HeLa, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
103077	93	CTG ...	LLS ...	Ribo-seq	CTG	moderate	17	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
910334	54	CCT ...	PTY ...	Ribo-seq	CCT	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
530431	108	CTG ...	LQE ...	Ribo-seq	CTG		10	sORFs_org_Human	Intronic sORF	BJ, Blood, HeLa, hES, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
1990258	132	CTG ...	LTS ...	Ribo-seq	CTG		4	sORFs_org_Human	Intronic sORF	HeLa, MDA-MB-231, RPE-1
910336	63	CAA ...	QRD ...	Ribo-seq	CAA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
910343	30	GCA ...	APT ...	Ribo-seq	GCA	moderate	1	sORFs_org_Human	Intronic sORF	Jurkat
1727172	156	CTG ...	LFS ...	Ribo-seq	CTG		6	sORFs_org_Human	Intronic sORF	Blood, HEK293, HeLa, MM1S, RPE-1
408340	87	TCA ...	SVI ...	Ribo-seq	TCA	moderate	1	sORFs_org_Human	Intronic sORF	HCT116
288272	33	TTG ...	LDR ...	Ribo-seq	TTG		18	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3224038	207	ATG ...	MDA ...	Ribo-seq	ATG		1	sORFs_org_Human	Intronic sORF	HeLa
530435	114	CTG ...	LLL ...	Ribo-seq	CTG		8	sORFs_org_Human	Intronic sORF	Blood, HeLa, loayza_puch_2016, MDA-MB-231, RPE-1, U2OS
408338	57	CGG ...	RPT ...	Ribo-seq	CGG	moderate	1	sORFs_org_Human	Intronic sORF	HCT116
910341	99	ACG ...	TDL ...	Ribo-seq	ACG	moderate	3	sORFs_org_Human	Intronic sORF	HeLa, Jurkat, THP-1
1727174	174	GTG ...	VPE ...	Ribo-seq	GTG		3	sORFs_org_Human	Intronic sORF	Blood, HeLa, MM1S
1206546	30	CTG ...	LAA ...	Ribo-seq	CTG	strong	11	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, hES, HFF, MDA-MB-231, MM1S, RPE-1
636013	33	ATG ...	MLA ...	Ribo-seq	ATG	weak	12	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, hES, HFF, MDA-MB-231, MM1S, RPE-1, THP-1
910345	75	ACC ...	THR ...	Ribo-seq	ACC		1	sORFs_org_Human	Intronic sORF	Jurkat
103075	90	CTG ...	LSV ...	Ribo-seq	CTG	weak	18	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, HFF, Jurkat, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
910338	72	GGA ...	GDG ...	Ribo-seq	GGA	strong	1	sORFs_org_Human	Intronic sORF	Jurkat

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