Transcript 8695 | MetamORF

Transcript

ID CARD

MetamORF ID

8695

ENST00000327331

Name

CDCA8-201

Strand

Biotype

protein_coding

Start-end positions

37692481-37709713

CDS Start-stop positions

37692691-37708366

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

HGNC:14629

Aliases

BOR,
CDCA8, DasraB, ENSG00000134690,
FLJ12042, HGNC:14629, MESRGP,
NCBI:55143, OFF:CDCA8

Chr 1

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1319812	282	CTG ...	LWS ...	Ribo-seq	CTG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293
8713	54	TTG ...	LLT ...	Ribo-seq	TTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, Jurkat, MDA-MB-231, RPE-1, U2OS
914137	36	ACT ...	TPY ...	Ribo-seq	ACT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1261658	54	TTG ...	LLS ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative Overlapping sORF Upstream	HAP1, HEK293, MDA-MB-231, RPE-1
914384	48	AGG ...	RRA ...	Ribo-seq	AGG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
914373	33	CAA ...	QTN ...	Ribo-seq	CAA	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
105465	72	GTG ...	VTC ...	Ribo-seq	GTG		16	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
914172	84	CAG ...	QTG ...	Ribo-seq	CAG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
914086	228	CAC ...	HSE ...	Ribo-seq	CAC		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
914426	42	CAG ...	QYC ...	Ribo-seq	CAG	moderate	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1319820	216	TTG ...	LLS ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, HEK293, HeLa, RPE-1
3400621	843	ATG ...	MAP ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
1127358	63	TTG ...	LEE ...	Ribo-seq	TTG		10	sORFs_org_Human	InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
1319816	273	TTG ...	LNW ...	Ribo-seq	TTG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293
249364	171	ATG ...	MNV ...	Ribo-seq	ATG		14	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	BJ, Blood, Brain_tumor, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
1319818	264	GTG ...	VAV ...	Ribo-seq	GTG		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	HEK293
8706	117	CTG ...	LAC ...	Ribo-seq	CTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
8697	60	CTG ...	LLP ...	Ribo-seq	CTG	moderate	12	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
887751	48	TCA ...	SVH ...	Ribo-seq	TCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2260613	111	TTG ...	LNW ...	Ribo-seq	TTG		2	sORFs_org_Human	Alternative Overlapping sORF Upstream	MDA-MB-231, RPE-1
2260624	102	GTG ...	VAV ...	Ribo-seq	GTG		2	sORFs_org_Human	Alternative Overlapping sORF Upstream	MDA-MB-231, RPE-1
1828765	39	CTG ...	LYR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
914393	33	CAA ...	QHL ...	Ribo-seq	CAA	weak	1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
1828767	30	ATG ...	MVQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
914151	48	CTT ...	LTE ...	Ribo-seq	CTT	weak	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
8711	66	ATG ...	MAA ...	Ribo-seq	ATG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, U2OS
8694	69	GTG ...	VLT ...	Ribo-seq	GTG	moderate	14	sORFs_org_Human	InCDS Overlapping sORF	Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
914397	75	TCT ...	SQG ...	Ribo-seq	TCT		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
537594	42	TTG ...	LEE ...	Ribo-seq	TTG		14	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
409940	36	AAA ...	KMN ...	Ribo-seq	AAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
887774	96	GAA ...	EKE ...	Ribo-seq	GAA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
295649	51	TTG ...	LPS ...	Ribo-seq	TTG		15	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, RPE-1, THP-1
105441	33	ATG ...	MNV ...	Ribo-seq	ATG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
914153	39	GCG ...	AEA ...	Ribo-seq	GCG	strong	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
914380	99	CAG ...	QQE ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
2335353	33	GTG ...	VTV ...	Ribo-seq	GTG		1	sORFs_org_Human	sORF Upstream	MDA-MB-231
249366	72	GTG ...	VSS ...	Ribo-seq	GTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
295656	42	CTG ...	LQQ ...	Ribo-seq	CTG	moderate	10	sORFs_org_Human	Downstream Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
295552	90	TTG ...	LSQ ...	Ribo-seq	TTG	moderate	14	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
887732	66	CAC ...	HSE ...	Ribo-seq	CAC		1	sORFs_org_Human	Alternative Overlapping sORF Upstream	Jurkat
8715	51	CTG ...	LTA ...	Ribo-seq	CTG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, U2OS

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