Transcript 284103

Transcript

ID CARD

MetamORF ID

284103

ENST00000351554

Name

CD59-201

Strand

Biotype

protein_coding

Start-end positions

33708865-33736445

CDS Start-stop positions

33710126-33722445

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

HGNC:1689

Aliases

16.3A5,
CD59, EJ16, EJ30,
EL32, ENSG00000085063, G344,
HGNC:1689, MIC11, MIN1,
MIN2, MIN3, MSK21,
NCBI:966, OFF:CD59, p18-20

Chr 11

ORFs

5 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
284102	54	CTG ...	LSA ...	Ribo-seq	CTG		18	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS
1993507	57	CTG ...	LSA ...	Ribo-seq	CTG		3	sORFs_org_Human	sORF Upstream	HeLa, RPE-1
1439651	108	CTG ...	LER ...	Ribo-seq	CTG		2	sORFs_org_Human	sORF	HeLa, MM1S
1597540	66	ATG ...	MRG ...	Ribo-seq	ATG		4	sORFs_org_Human	sORF Upstream	HeLa, loayza_puch_2016, RPE-1
284105	63	ATG ...	MRG ...	Ribo-seq	ATG		16	sORFs_org_Human	Alternative sORF Upstream	BJ, Blood, HEK293, HeLa, hES, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, U2OS

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