Transcript 1171 | MetamORF

Transcript

ID CARD

MetamORF ID

1171

ENST00000263102

Name

CCDC6-201

Strand

Biotype

protein_coding

Start-end positions

59788763-59906656

CDS Start-stop positions

59792917-59906424

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

HGNC:18782

Aliases

CCDC6,
D10S170, ENSG00000108091, H4,
HGNC:18782, NCBI:8030, OFF:CCDC6,
PTC, TPC, TST1

Chr 10

ORFs

38 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1815957	78	CTG ...	LLS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1815961	90	TTG ...	LGS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
274526	36	TTG ...	LKI ...	Ribo-seq	TTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
1815952	75	GTG ...	VCL ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1717401	84	CTG ...	LSR ...	Ribo-seq	CTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, RPE-1
1985111	30	CTG ...	LKS ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative InCDS Overlapping sORF	HeLa, hES, MDA-MB-231
1201850	36	TTG ...	LNK ...	Ribo-seq	TTG	moderate	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	HAP1, HEK293, hES, HFF, MDA-MB-231, RPE-1
274528	42	TTG ...	LTL ...	Ribo-seq	TTG	moderate	8	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, LCL, MDA-MB-231, RPE-1, U2OS
1133171	48	ATG ...	MRK ...	Ribo-seq	ATG	moderate	8	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1
1815983	105	GTG ...	VIF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1815964	36	TTG ...	LRT ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1721188	36	TTG ...	LKL ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, MDA-MB-231
274530	75	TTG ...	LSS ...	Ribo-seq	TTG	moderate	12	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, Brain, HAP1, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, U2OS
406044	45	TGG ...	WTT ...	Ribo-seq	TGG		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
2307238	111	CTG ...	LCP ...	Ribo-seq	CTG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, MDA-MB-231, RPE-1
1815981	45	GTG ...	VFA ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1815972	30	TTG ...	LPL ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
935371	54	CTG ...	LVY ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HEK293, HeLa, hES, MDA-MB-231, RPE-1
1815977	30	ATG ...	MTR ...	Ribo-seq	ATG	weak	2	sORFs_org_Human Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
1815995	96	ATG ...	MHE ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative Downstream sORF	Brain_tumor, HEK293, HeLa, HFF
3302632	1425	ATG ...	MAD ...	Ribo-seq	ATG		1	Johnstone2016	CDS	Brain_tumor, HEK293, HeLa, HFF
1815968	93	GTG ...	VSF ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Downstream sORF	HeLa
895207	261	GCC ...	AVP ...	Ribo-seq	GCC		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
1815966	81	GTG ...	VFE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1170	60	CTG ...	LLS ...	Ribo-seq	CTG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HEK293, HeLa, hES, MDA-MB-231, RPE-1
404348	204	GGT ...	GAE ...	Ribo-seq	GGT		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116, Jurkat
630223	42	ATG ...	MQV ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, HFF
1815950	69	CTG ...	LHS ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1815970	66	CTG ...	LWT ...	Ribo-seq	CTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1815954	87	GTG ...	VCA ...	Ribo-seq	GTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
901309	270	CTG ...	LEC ...	Ribo-seq	CTG		3	sORFs_org_Human	Alternative Downstream Overlapping sORF	hES, Jurkat, MDA-MB-231
2297358	57	CTG ...	LLH ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, HeLa, hES, MDA-MB-231
1815975	30	TTG ...	LFG ...	Ribo-seq	TTG	weak	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
1815979	66	GTG ...	VDE ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	Alternative Downstream sORF	HeLa
404350	198	GCG ...	ATR ...	Ribo-seq	GCG	moderate	1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HCT116
1815959	39	CTG ...	LNC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Downstream sORF	HeLa
1816001	30	ATG ...	MTP ...	Ribo-seq	ATG	moderate	6	sORFs_org_Human Johnstone2016	Alternative InCDS Overlapping sORF	Brain_tumor, HEK293, HeLa, hES, HFF, MDA-MB-231
274532	93	GTG ...	VGS ...	Ribo-seq	GTG	strong	6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Brain, HAP1, HeLa, LCL, MDA-MB-231, RPE-1

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