Transcript 4786 | MetamORF

Transcript

ID CARD

MetamORF ID

4786

ENST00000483009

Name

CCDC28B-205

Strand

Biotype

processed_transcript

Start-end positions

32201696-32205214

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

HGNC:28163

Aliases

CCDC28B,
ENSG00000160050, HGNC:28163, MGC1203,
NCBI:79140, OFF:CCDC28B, RP4-622L5.5

Chr 1

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
288379	135	CTG ...	LTE ...	Ribo-seq	CTG		5	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, LCL
288377	186	CTG ...	LAG ...	Ribo-seq	CTG		6	sORFs_org_Human	ncRNA sORF	HAP1, HEK293, HeLa, hES, LCL
1317019	150	CTG ...	LQH ...	Ribo-seq	CTG		5	sORFs_org_Human	ncRNA sORF	HEK293, HeLa, hES
288383	30	ATG ...	MSM ...	Ribo-seq	ATG	weak	5	sORFs_org_Human	ncRNA sORF	Blood, HeLa, LCL, THP-1
288403	132	ATG ...	MKR ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	LCL
905024	177	GAG ...	EGP ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
288381	33	CTG ...	LMS ...	Ribo-seq	CTG	weak	6	sORFs_org_Human	ncRNA sORF	Blood, HeLa, LCL, THP-1
1207322	114	ATG ...	MTK ...	Ribo-seq	ATG	weak	2	sORFs_org_Human	ncRNA sORF	HAP1, HEK293
1732000	33	CTG ...	LQA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Human	ncRNA sORF	Blood, MDA-MB-231
905001	243	CAA ...	QKE ...	Ribo-seq	CAA		1	sORFs_org_Human	ncRNA sORF	Jurkat
1731977	51	CTG ...	LEV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	ncRNA sORF	Blood
288401	150	GTG ...	VGR ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	LCL
1317022	126	GTG ...	VTD ...	Ribo-seq	GTG		4	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
905138	36	GAG ...	ENA ...	Ribo-seq	GAG		1	sORFs_org_Human	ncRNA sORF	Jurkat
288395	156	ATG ...	MCV ...	Ribo-seq	ATG		1	sORFs_org_Human	ncRNA sORF	LCL
905032	162	CAC ...	HSG ...	Ribo-seq	CAC		1	sORFs_org_Human	ncRNA sORF	Jurkat
1317029	93	CTG ...	LNL ...	Ribo-seq	CTG		1	sORFs_org_Human	ncRNA sORF	HEK293
905077	159	GGC ...	GTP ...	Ribo-seq	GGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
288375	81	GTG ...	VPP ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	ncRNA sORF	Blood, HEK293, HEK293T, HeLa, LCL
1824773	36	CTG ...	LCL ...	Ribo-seq	CTG	weak	2	sORFs_org_Human	ncRNA sORF	HEK293, HeLa
4785	45	GTG ...	VEA ...	Ribo-seq	GTG	strong	2	sORFs_org_Human	ncRNA sORF	Blood, HEK293
4798	42	TTG ...	LSS ...	Ribo-seq	TTG		7	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, LCL

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