Transcript 282344

Transcript

ID CARD

MetamORF ID

282344

ENST00000439280

Name

CARS-204

Strand

Biotype

nonsense_mediated_decay

Start-end positions

3029084-3057429

CDS Start-stop positions

3041011-3057367

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

HGNC:1493

Aliases

CARS,
CARS1, ENSG00000110619, HGNC:1493,
NCBI:833, OFF:CARS

Chr 11

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
903484	30	GAG ...	ERK ...	Ribo-seq	GAG		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
1503860	198	GTG ...	VLL ...	Ribo-seq	GTG	moderate	5	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, HeLa, hES, HFF
282352	165	CTG ...	LDF ...	Ribo-seq	CTG		7	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, RPE-1
282343	78	ATG ...	MSL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Human	Downstream NMD sORF	Blood, LCL, MDA-MB-231
1503850	72	CTG ...	LTI ...	Ribo-seq	CTG	weak	4	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, hES, MDA-MB-231
903489	180	GAG ...	EKA ...	Ribo-seq	GAG		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
406619	186	GAA ...	EAK ...	Ribo-seq	GAA	strong	1	sORFs_org_Human	Alternative Downstream NMD sORF	HCT116
282356	180	GTG ...	VCG ...	Ribo-seq	GTG		2	sORFs_org_Human	Downstream NMD sORF	Blood, LCL
1503856	192	CTG ...	LEE ...	Ribo-seq	CTG	moderate	5	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, HeLa, hES, HFF
903491	192	ACA ...	TEP ...	Ribo-seq	ACA		1	sORFs_org_Human	Downstream NMD sORF	Jurkat
1503854	174	TTG ...	LLS ...	Ribo-seq	TTG	moderate	4	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, HeLa, hES, HFF
282350	108	CTG ...	LTG ...	Ribo-seq	CTG	weak	7	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, RPE-1
903495	84	CAG ...	QCS ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative Downstream NMD sORF	Jurkat
406621	51	CTG ...	LCS ...	Ribo-seq	CTG		9	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, HAP1, HCT116, HEK293, hES, Jurkat, MDA-MB-231, RPE-1
282354	168	CTG ...	LLD ...	Ribo-seq	CTG		5	sORFs_org_Human	Downstream NMD sORF	Blood, HeLa, LCL, MDA-MB-231, RPE-1
3312088	387	ATG ...	MAD ...	Predicted	ATG		1	Mackowiak2015	CDS NMD sORF
1503858	195	TTG ...	LLE ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, HeLa, hES, HFF
2422405	159	CTG ...	LDS ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative Downstream NMD sORF	HeLa, hES, HFF
282346	81	GTG ...	VMS ...	Ribo-seq	GTG	moderate	4	sORFs_org_Human	Downstream NMD sORF	Blood, hES, LCL, MDA-MB-231
903493	75	TTG ...	LPQ ...	Ribo-seq	TTG		8	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, HAP1, HEK293, hES, Jurkat, MDA-MB-231, RPE-1
1204502	135	ATG ...	MRP ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, HAP1, HEK293, hES, MDA-MB-231, RPE-1
1204499	60	TTG ...	LRK ...	Ribo-seq	TTG		7	sORFs_org_Human	Alternative Downstream NMD sORF	BJ, Blood, HAP1, HEK293, hES, MDA-MB-231, RPE-1
282348	87	TTG ...	LAV ...	Ribo-seq	TTG	moderate	5	sORFs_org_Human	Downstream NMD sORF	BJ, Blood, HeLa, LCL, MDA-MB-231

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