Transcript 3060 | MetamORF

Transcript

ID CARD

MetamORF ID

3060

ENST00000533562

Name

CAPRIN1-213

Strand

Biotype

processed_transcript

Start-end positions

34096160-34097272

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCT ...

Genome browsers

UCSC

Gene

HGNC:6743

Aliases

caprin-1,
CAPRIN1, ENSG00000135387, GPIAP1,
HGNC:6743, M11S1, NCBI:4076,
OFF:CAPRIN1, RNG105

Chr 11

ORFs

33 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
101555	90	CTG ...	LFM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	ncRNA sORF	HEK293
905799	72	TCC ...	SKQ ...	Ribo-seq	TCC		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
3068	114	GTG ...	VSR ...	Ribo-seq	GTG		25	sORFs_org_Human	ncRNA sORF	BJ, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MM1S, RPE-1, THP-1, U2OS
905794	129	TAC ...	YNS ...	Ribo-seq	TAC		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
905792	75	TTC ...	FHV ...	Ribo-seq	TTC	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
407177	84	GGC ...	GLM ...	Ribo-seq	GGC		1	sORFs_org_Human	ncRNA sORF	HCT116
3200170	141	AAT ...	NQP ...	Ribo-seq	AAT		1	sORFs_org_Human	ncRNA sORF	HEK293
3200175	144	CGC ...	RPS ...	Ribo-seq	CGC		1	sORFs_org_Human	ncRNA sORF	HEK293
284191	39	GTG ...	VCL ...	Ribo-seq	GTG	moderate	20	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
101557	84	ATG ...	MYI ...	Ribo-seq	ATG	weak	1	sORFs_org_Human	ncRNA sORF	HEK293
3059	42	TTG ...	LAL ...	Ribo-seq	TTG	moderate	17	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
905784	39	GCA ...	ALT ...	Ribo-seq	GCA	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
3200183	39	TGC ...	CSP ...	Ribo-seq	TGC		1	sORFs_org_Human	ncRNA sORF	HEK293
3064	114	CTG ...	LVT ...	Ribo-seq	CTG	moderate	28	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
407183	96	TTC ...	FSA ...	Ribo-seq	TTC		1	sORFs_org_Human	ncRNA sORF	HCT116
905801	66	CAG ...	QWL ...	Ribo-seq	CAG		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
3070	81	TTG ...	LMN ...	Ribo-seq	TTG		11	sORFs_org_Human	ncRNA sORF	BJ, Brain, HEK293, HeLa, hES, HFF
3200168	72	CAC ...	HVA ...	Ribo-seq	CAC	moderate	1	sORFs_org_Human	ncRNA sORF	HEK293
3200180	57	TAC ...	YTV ...	Ribo-seq	TAC		1	sORFs_org_Human	ncRNA sORF	HEK293
905796	30	TGT ...	CVS ...	Ribo-seq	TGT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
407181	51	GTC ...	VSV ...	Ribo-seq	GTC		3	sORFs_org_Human	ncRNA sORF	HCT116, HEK293, Jurkat
905786	39	CCA ...	PWF ...	Ribo-seq	CCA	weak	1	sORFs_org_Human	ncRNA sORF	Jurkat
905790	84	ACA ...	TLD ...	Ribo-seq	ACA	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
3072	99	ATG ...	MMV ...	Ribo-seq	ATG		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
905788	36	GCA ...	AAS ...	Ribo-seq	GCA	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
905803	60	TTA ...	LYT ...	Ribo-seq	TTA		1	sORFs_org_Human	ncRNA sORF	Jurkat
284196	45	ATG ...	MDT ...	Ribo-seq	ATG		20	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MM1S, RPE-1, U2OS
284194	30	GTG ...	VEA ...	Ribo-seq	GTG	moderate	14	sORFs_org_Human	ncRNA sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
284198	30	CTG ...	LPM ...	Ribo-seq	CTG		12	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, HAP1, HEK293, HeLa, hES, LCL, RPE-1
284189	42	GTG ...	VVC ...	Ribo-seq	GTG	strong	20	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
3066	81	CTG ...	LDF ...	Ribo-seq	CTG	strong	27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
101560	30	ATG ...	MVP ...	Ribo-seq	ATG	strong	11	sORFs_org_Human	ncRNA sORF	Blood, Flp-In_T-REx-293, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
3062	195	GTG ...	VTG ...	Ribo-seq	GTG		30	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS

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