Transcript 3073 | MetamORF

Transcript

ID CARD

MetamORF ID

3073

ENST00000531668

Name

CAPRIN1-210

Strand

Biotype

processed_transcript

Start-end positions

34095819-34099388

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

HGNC:6743

Aliases

caprin-1,
CAPRIN1, ENSG00000135387, GPIAP1,
HGNC:6743, M11S1, NCBI:4076,
OFF:CAPRIN1, RNG105

Chr 11

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1820278	36	GTG ...	VEL ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HeLa
3200188	75	AGC ...	SEA ...	Ribo-seq	AGC		1	sORFs_org_Human	ncRNA sORF	HEK293
284198	30	CTG ...	LPM ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	HeLa, loayza_puch_2016
284203	36	GTG ...	VLP ...	Ribo-seq	GTG		25	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1205063	66	CTG ...	LGR ...	Ribo-seq	CTG		2	sORFs_org_Human	ncRNA sORF	Blood, HAP1
1820280	75	TTG ...	LNT ...	Ribo-seq	TTG		1	sORFs_org_Human	ncRNA sORF	HeLa
3075	96	ATG ...	MVT ...	Ribo-seq	ATG		27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
3077	60	GTG ...	VVI ...	Ribo-seq	GTG		26	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
3072	99	ATG ...	MMV ...	Ribo-seq	ATG		27	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
284207	96	ATG ...	MDI ...	Ribo-seq	ATG		16	sORFs_org_Human	ncRNA sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231
284205	108	TTG ...	LSF ...	Ribo-seq	TTG		6	sORFs_org_Human	ncRNA sORF	Blood, HAP1, HEK293, HeLa, hES, LCL
905811	63	GGC ...	GRV ...	Ribo-seq	GGC		1	sORFs_org_Human	ncRNA sORF	Jurkat
905807	87	AGC ...	SRI ...	Ribo-seq	AGC		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
3200185	33	CCG ...	PGL ...	Ribo-seq	CCG		1	sORFs_org_Human	ncRNA sORF	HEK293
1205065	57	GTG ...	VDH ...	Ribo-seq	GTG		1	sORFs_org_Human	ncRNA sORF	HAP1
2053450	42	GTG ...	VEG ...	Ribo-seq	GTG	strong	1	sORFs_org_Human	ncRNA sORF	HEK293
905809	42	AGG ...	RLW ...	Ribo-seq	AGG		2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat

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