Transcript 3053 | MetamORF

Transcript

ID CARD

MetamORF ID

3053

ENST00000528948

Name

CAPRIN1-206

Strand

Biotype

processed_transcript

Start-end positions

34091619-34096625

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGT ...

Genome browsers

UCSC

Gene

HGNC:6743

Aliases

caprin-1,
CAPRIN1, ENSG00000135387, GPIAP1,
HGNC:6743, M11S1, NCBI:4076,
OFF:CAPRIN1, RNG105

Chr 11

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3055	39	ATG ...	MPQ ...	Ribo-seq	ATG	weak	19	sORFs_org_Human	ncRNA sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1
3200159	45	ACC ...	TRN ...	Ribo-seq	ACC	weak	1	sORFs_org_Human	ncRNA sORF	HEK293
3200165	75	AGC ...	SKN ...	Ribo-seq	AGC		1	sORFs_org_Human	ncRNA sORF	HEK293
905776	45	AGG ...	RPV ...	Ribo-seq	AGG	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
905769	30	CAA ...	QYE ...	Ribo-seq	CAA	moderate	2	sORFs_org_Human	ncRNA sORF	HEK293, Jurkat
3200163	165	AGT ...	SQP ...	Ribo-seq	AGT		1	sORFs_org_Human	ncRNA sORF	HEK293
3052	261	GTG ...	VFN ...	Ribo-seq	GTG		15	sORFs_org_Human	ncRNA sORF	Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HeLa, hES, HFF
407175	57	AAA ...	KIS ...	Ribo-seq	AAA	moderate	2	sORFs_org_Human	ncRNA sORF	HCT116, HEK293
905774	36	TTT ...	FKT ...	Ribo-seq	TTT	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
905778	168	TCT ...	SSQ ...	Ribo-seq	TCT		1	sORFs_org_Human	ncRNA sORF	Jurkat
905782	111	GGT ...	GTK ...	Ribo-seq	GGT		1	sORFs_org_Human	ncRNA sORF	Jurkat
905780	96	TCA ...	SAR ...	Ribo-seq	TCA		1	sORFs_org_Human	ncRNA sORF	Jurkat
905772	42	AGA ...	RNF ...	Ribo-seq	AGA	moderate	1	sORFs_org_Human	ncRNA sORF	Jurkat
407173	231	GTT ...	VNE ...	Ribo-seq	GTT		2	sORFs_org_Human	ncRNA sORF	HCT116, Jurkat

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