Transcript 5051 | MetamORF

Transcript

ID CARD

MetamORF ID

5051

ENST00000527897

Name

CAPN1-213

Strand

Biotype

retained_intron

Start-end positions

65185932-65187686

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

HGNC:1476

Aliases

CANP,
CANPL1, CAPN1, ENSG00000014216,
HGNC:1476, muCANP, muCL,
NCBI:823, OFF:CAPN1

Chr 11

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
5059	96	CTG ...	LLP ...	Ribo-seq	CTG	moderate	27	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
5055	105	GTG ...	VDD ...	Ribo-seq	GTG	strong	28	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
909439	36	TGC ...	CRR ...	Ribo-seq	TGC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
287326	63	GTG ...	VTS ...	Ribo-seq	GTG	weak	8	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, LCL, MDA-MB-231, RPE-1
909435	45	CGT ...	RAL ...	Ribo-seq	CGT	strong	1	sORFs_org_Human	Intronic sORF	Jurkat
5057	33	ATG ...	MTC ...	Ribo-seq	ATG	weak	16	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
909441	30	GTC ...	VRG ...	Ribo-seq	GTC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
287322	117	TTG ...	LRT ...	Ribo-seq	TTG	moderate	9	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1
287320	162	ATG ...	MAA ...	Ribo-seq	ATG	moderate	8	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HFF, LCL, MDA-MB-231, RPE-1
5053	111	GTG ...	VVV ...	Ribo-seq	GTG	strong	29	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
5061	93	CTG ...	LPI ...	Ribo-seq	CTG	weak	28	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
5063	69	GTG ...	VFV ...	Ribo-seq	GTG	weak	28	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
5065	63	GTG ...	VHS ...	Ribo-seq	GTG	weak	28	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
5050	117	GTG ...	VDV ...	Ribo-seq	GTG	moderate	28	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, guo_2014, HAP1, HEK293, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
287324	30	GTG ...	VVR ...	Ribo-seq	GTG	moderate	13	sORFs_org_Human	Intronic sORF	BJ, Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1, THP-1, U2OS
635623	216	CTG ...	LSG ...	Ribo-seq	CTG		9	sORFs_org_Human	Intronic sORF	BJ, Brain, HeLa, hES, HFF, RPE-1, THP-1
938174	150	TTG ...	LRK ...	Ribo-seq	TTG		1	sORFs_org_Human	Intronic sORF	Brain
909433	87	ATC ...	IKD ...	Ribo-seq	ATC	weak	1	sORFs_org_Human	Intronic sORF	Jurkat
5067	60	CTG ...	LPK ...	Ribo-seq	CTG	moderate	13	sORFs_org_Human	Intronic sORF	BJ, Blood, HAP1, HEK293, HeLa, HFF, LCL, MDA-MB-231, RPE-1, THP-1

Export data