Transcript 8729 | MetamORF

Transcript

ID CARD

MetamORF ID

8729

ENST00000527323

Name

CAPN1-208

Strand

Biotype

protein_coding

Start-end positions

65182462-65211987

CDS Start-stop positions

65182702-65211286

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

HGNC:1476

Aliases

CANP,
CANPL1, CAPN1, ENSG00000014216,
HGNC:1476, muCANP, muCL,
NCBI:823, OFF:CAPN1

Chr 11

ORFs

54 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3201227	105	AGG ...	RPI ...	Ribo-seq	AGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293
916592	174	TGC ...	CVS ...	Ribo-seq	TGC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
294771	72	CTG ...	LGR ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
638485	60	TTG ...	LAS ...	Ribo-seq	TTG		8	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HeLa, hES, HFF, MDA-MB-231, THP-1
294797	102	ATG ...	MGS ...	Ribo-seq	ATG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
294775	177	ATG ...	MRR ...	Ribo-seq	ATG		11	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HEK293, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
635604	117	GTG ...	VGP ...	Ribo-seq	GTG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HeLa, hES, MDA-MB-231, RPE-1, THP-1
909410	84	GAT ...	DHH ...	Ribo-seq	GAT	moderate	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
635595	237	CTG ...	LGC ...	Ribo-seq	CTG		13	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
294785	90	ATG ...	MSK ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, hES, LCL, MDA-MB-231, RPE-1
909416	216	AGA ...	RSS ...	Ribo-seq	AGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
916594	165	GGC ...	GAL ...	Ribo-seq	GGC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
105344	60	CTG ...	LPK ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, MDA-MB-231, THP-1
909412	240	GCA ...	ALG ...	Ribo-seq	GCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
909418	171	CCA ...	PSS ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
294787	63	TTG ...	LTR ...	Ribo-seq	TTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, LCL, MDA-MB-231, RPE-1
638480	45	CTG ...	LER ...	Ribo-seq	CTG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HeLa, hES, MDA-MB-231, THP-1
635597	180	ATG ...	MRM ...	Ribo-seq	ATG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
1512572	114	ATG ...	MEH ...	Ribo-seq	ATG		6	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, MDA-MB-231, RPE-1
916596	84	CTC ...	LHL ...	Ribo-seq	CTC		1	sORFs_org_Human	InCDS Overlapping sORF	Jurkat
2957296	33	CTG ...	LDS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Human	Alternative sORF Upstream	hES
287302	30	ATG ...	MAS ...	Ribo-seq	ATG		18	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, Brain, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, RPE-1, THP-1, U2OS
294777	168	ATG ...	MTR ...	Ribo-seq	ATG		10	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
8728	81	TTG ...	LLP ...	Ribo-seq	TTG		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
534254	57	GTG ...	VDG ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HeLa, MDA-MB-231, RPE-1, THP-1, U2OS
909427	45	GGA ...	GWS ...	Ribo-seq	GGA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
294793	111	GTG ...	VMA ...	Ribo-seq	GTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
294773	222	ATG ...	MNG ...	Ribo-seq	ATG		8	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HEK293, HFF, LCL, MDA-MB-231, RPE-1
635599	174	ATG ...	MPS ...	Ribo-seq	ATG		12	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1
8731	78	CTG ...	LPG ...	Ribo-seq	CTG		10	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, HEK293, HeLa, hES, LCL, MDA-MB-231, RPE-1
909414	228	CAG ...	QPK ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
529696	30	ATG ...	MPA ...	Ribo-seq	ATG	moderate	10	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, MDA-MB-231, RPE-1, THP-1, U2OS
294791	114	ATC ...	IVM ...	Ribo-seq	ATC		11	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
635591	297	CTG ...	LSR ...	Ribo-seq	CTG		11	sORFs_org_Human	Alternative Overlapping sORF Upstream	BJ, Blood, HAP1, HEK293, HeLa, HFF, MDA-MB-231, RPE-1, THP-1
909420	159	TGG ...	WAR ...	Ribo-seq	TGG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
916588	36	CAG ...	QLL ...	Ribo-seq	CAG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
909425	48	CCA ...	PIP ...	Ribo-seq	CCA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
916590	183	GCG ...	AGV ...	Ribo-seq	GCG		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
294795	108	ATG ...	MAM ...	Ribo-seq	ATG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, LCL, MDA-MB-231, RPE-1, THP-1
635608	99	ATG ...	MRP ...	Ribo-seq	ATG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HFF, MDA-MB-231, RPE-1, THP-1
635593	66	CTG ...	LHW ...	Ribo-seq	CTG	moderate	4	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, MDA-MB-231, THP-1
294781	201	GTG ...	VQG ...	Ribo-seq	GTG		5	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HeLa, LCL, THP-1
1512570	159	CTG ...	LQP ...	Ribo-seq	CTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HeLa, hES, MDA-MB-231, RPE-1
635606	102	GTG ...	VMR ...	Ribo-seq	GTG		7	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, HAP1, HFF, MDA-MB-231, RPE-1, THP-1
916598	75	CCT ...	PGA ...	Ribo-seq	CCT		2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
294789	186	TTG ...	LHP ...	Ribo-seq	TTG		1	sORFs_org_Human	InCDS Overlapping sORF	LCL
909422	63	ACA ...	TRT ...	Ribo-seq	ACA		1	sORFs_org_Human	Alternative InCDS Overlapping sORF	Jurkat
3201225	63	CTA ...	LLA ...	Ribo-seq	CTA		1	sORFs_org_Human	InCDS Overlapping sORF	HEK293
1732302	87	CTG ...	LAA ...	Ribo-seq	CTG		4	sORFs_org_Human	Alternative InCDS Overlapping sORF	Blood, hES, MDA-MB-231
294783	117	ATG ...	MTR ...	Ribo-seq	ATG		5	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, hES, LCL, MDA-MB-231, RPE-1
294779	204	GTG ...	VVQ ...	Ribo-seq	GTG		5	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HeLa, LCL, THP-1
909408	93	GTC ...	VGG ...	Ribo-seq	GTC	strong	2	sORFs_org_Human	Alternative InCDS Overlapping sORF	HEK293, Jurkat
638489	186	CTG ...	LGP ...	Ribo-seq	CTG		4	sORFs_org_Human	InCDS Overlapping sORF	BJ, Blood, HeLa, THP-1
635601	147	ATG ...	MSS ...	Ribo-seq	ATG		9	sORFs_org_Human	Alternative InCDS Overlapping sORF	BJ, Blood, HAP1, HEK293, HeLa, MDA-MB-231, RPE-1, THP-1

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