Transcript 287305

Transcript

ID CARD

MetamORF ID

287305

ENST00000526468

Name

CAPN1-204

Strand

Biotype

protein_coding

Start-end positions

65183336-65188000

CDS Start-stop positions

65183452-

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

HGNC:1476

Aliases

CANP,
CANPL1, CAPN1, ENSG00000014216,
HGNC:1476, muCANP, muCL,
NCBI:823, OFF:CAPN1

Chr 11

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
638474	99	ATG ...	MAM ...	Ribo-seq	ATG		9	sORFs_org_Human	sORF	BJ, HEK293, HeLa, hES, MDA-MB-231, RPE-1, THP-1
638476	57	CTG ...	LPK ...	Ribo-seq	CTG		10	sORFs_org_Human	sORF	BJ, Blood, HAP1, HEK293, HeLa, HFF, MDA-MB-231, RPE-1, THP-1
287304	132	CTG ...	LPQ ...	Ribo-seq	CTG		10	sORFs_org_Human	sORF	BJ, Blood, HeLa, hES, HFF, LCL, MDA-MB-231, RPE-1, THP-1
287309	60	TTG ...	LGS ...	Ribo-seq	TTG	strong	6	sORFs_org_Human	sORF	BJ, HEK293, HeLa, hES, LCL, MDA-MB-231
482621	33	ATG ...	MAM ...	Ribo-seq	ATG		16	sORFs_org_Human	sORF	BJ, Blood, Brain, HEK293, HEK293T, HeLa, hES, HFF, MDA-MB-231, RPE-1, THP-1, U2OS
909431	54	CGC ...	RTA ...	Ribo-seq	CGC		1	sORFs_org_Human	sORF	Jurkat
287307	39	GTG ...	VAI ...	Ribo-seq	GTG	strong	4	sORFs_org_Human	sORF	BJ, LCL, MDA-MB-231, RPE-1
909429	225	GGC ...	GGH ...	Ribo-seq	GGC		1	sORFs_org_Human	sORF	Jurkat
1512564	198	CTG ...	LPQ ...	Ribo-seq	CTG		7	sORFs_org_Human	sORF	BJ, HEK293, HeLa, hES, HFF, MDA-MB-231, RPE-1

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