Transcript 2788 | MetamORF

Transcript

ID CARD

MetamORF ID

2788

ENST00000525256

Name

C11orf58-206

Strand

Biotype

retained_intron

Start-end positions

16738659-16748591

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

HGNC:16990

Aliases

C11orf58,
ENSG00000110696, HGNC:16990, NCBI:10944,
OFF:C11orf58, SMAP

Chr 11

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
406899	96	ATT ...	IFR ...	Ribo-seq	ATT		7	sORFs_org_Human	Intronic sORF	BJ, HCT116, HEK293, HeLa, Jurkat, THP-1
101233	30	CTG ...	LPE ...	Ribo-seq	CTG	moderate	21	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, MDA-MB-231, MM1S, RPE-1, THP-1
2800	129	TTG ...	LRL ...	Ribo-seq	TTG		35	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HCT116, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2802	123	CTG ...	LGR ...	Ribo-seq	CTG		32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
101235	63	GTG ...	VKR ...	Ribo-seq	GTG		3	sORFs_org_Human	Intronic sORF	HEK293
2792	165	CTG ...	LLG ...	Ribo-seq	CTG		33	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
101231	33	GTG ...	VLP ...	Ribo-seq	GTG	weak	25	sORFs_org_Human	Intronic sORF	BJ, Blood, Flp-In_T-REx-293, HAP1, HEK293, HEK293T, HeLa, hES, HFF, Jurkat, LCL, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
904825	54	TCA ...	SAS ...	Ribo-seq	TCA		2	sORFs_org_Human	Intronic sORF	HEK293, Jurkat
2796	138	CTG ...	LLV ...	Ribo-seq	CTG		32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2787	183	CTG ...	LRS ...	Ribo-seq	CTG		32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
2790	171	GTG ...	VAL ...	Ribo-seq	GTG		32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
1301568	90	CGT ...	RRD ...	Ribo-seq	CGT		1	sORFs_org_Human	Intronic sORF	BJ
2794	153	TTG ...	LAD ...	Ribo-seq	TTG		32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
406896	168	GCG ...	ALL ...	Ribo-seq	GCG		3	sORFs_org_Human	Intronic sORF	HCT116, HEK293, Jurkat
2798	135	CTG ...	LVL ...	Ribo-seq	CTG		32	sORFs_org_Human	Intronic sORF	BJ, Blood, Brain, Flp-In_T-REx-293, guo_2014, HAP1, HEK293, HEK293T, HeLa, hES, HFF, LCL, loayza_puch_2016, MDA-MB-231, MM1S, RPE-1, THP-1, U2OS
904823	60	CAG ...	QRV ...	Ribo-seq	CAG		4	sORFs_org_Human	Intronic sORF	BJ, HEK293, Jurkat

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